Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0283
(497 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 103 1e-23
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 103 1e-23
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 63 2e-11
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 44 2e-05
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 40 2e-04
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 35 0.008
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 34 0.014
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 34 0.014
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 34 0.014
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 32 0.055
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 29 0.39
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 28 0.90
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 28 0.90
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 27 2.1
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 26 2.7
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 2.7
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 26 2.7
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl... 26 3.6
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 25 4.8
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 4.8
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 25 4.8
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 6.3
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 25 6.3
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 25 6.3
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 25 8.4
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 103 bits (248), Expect = 1e-23
Identities = 48/66 (72%), Positives = 55/66 (83%)
Frame = +2
Query: 53 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGDTRFTDTR 232
MV FT +E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AGD RF DTR
Sbjct: 1 MVAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTR 60
Query: 233 KDEQDR 250
DEQ+R
Sbjct: 61 ADEQER 66
Score = 74.1 bits (174), Expect = 1e-14
Identities = 44/81 (54%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +1
Query: 256 TIKSTAISMFFELEEKDLVFITNPDQREKSD-KGFLINLIASPGHVDFSSEVTAALRVTX 432
TIKSTAIS+F E+ + D+ D +E +D FL+NLI SPGHVDFSSEVTAALRVT
Sbjct: 69 TIKSTAISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTD 123
Query: 433 XXXXXXXXXXXXXXQTETVLR 495
QTETVLR
Sbjct: 124 GALVVVDTIEGVCVQTETVLR 144
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 103 bits (248), Expect = 1e-23
Identities = 48/66 (72%), Positives = 55/66 (83%)
Frame = +2
Query: 53 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGDTRFTDTR 232
MV FT +E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AGD RF DTR
Sbjct: 1 MVAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTR 60
Query: 233 KDEQDR 250
DEQ+R
Sbjct: 61 ADEQER 66
Score = 74.1 bits (174), Expect = 1e-14
Identities = 44/81 (54%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +1
Query: 256 TIKSTAISMFFELEEKDLVFITNPDQREKSD-KGFLINLIASPGHVDFSSEVTAALRVTX 432
TIKSTAIS+F E+ + D+ D +E +D FL+NLI SPGHVDFSSEVTAALRVT
Sbjct: 69 TIKSTAISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTD 123
Query: 433 XXXXXXXXXXXXXXQTETVLR 495
QTETVLR
Sbjct: 124 GALVVVDTIEGVCVQTETVLR 144
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 63.3 bits (147), Expect = 2e-11
Identities = 28/60 (46%), Positives = 41/60 (68%)
Frame = +2
Query: 71 DEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGDTRFTDTRKDEQDR 250
+++ + + NIRN +++AHVDHGK+TL DSL++ GII+ AG RF D R+DE R
Sbjct: 7 EKLVSLQKNQENIRNFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITR 66
Score = 56.0 bits (129), Expect = 3e-09
Identities = 35/80 (43%), Positives = 49/80 (61%)
Frame = +1
Query: 256 TIKSTAISMFFELEEKDLVFITNPDQREKSDKGFLINLIASPGHVDFSSEVTAALRVTXX 435
T+KS+AIS+FF++ I+ D++ + +K +LINLI SPGHVDFSSEV++A R+
Sbjct: 69 TMKSSAISLFFKV-------ISQNDEK-RVEKDYLINLIDSPGHVDFSSEVSSASRLCDG 120
Query: 436 XXXXXXXXXXXXXQTETVLR 495
QT TVLR
Sbjct: 121 AFVLVDAVEGVCSQTITVLR 140
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 43.6 bits (98), Expect = 2e-05
Identities = 25/70 (35%), Positives = 40/70 (57%)
Frame = +2
Query: 77 IRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGDTRFTDTRKDEQDRCT 256
+RG+ + +RN +VIAH+DHGKSTL+D ++ G+I +F D K E +R
Sbjct: 50 VRGIPQNR--VRNWAVIAHIDHGKSTLSDCILKLTGVI-NEHNFRNQFLD--KLEVERRR 104
Query: 257 PLNLRPSLCS 286
+ ++ CS
Sbjct: 105 GITVKAQTCS 114
Score = 32.7 bits (71), Expect = 0.032
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +1
Query: 349 KGFLINLIASPGHVDFSSEVTAAL 420
+ +L+NLI +PGHVDF +EV +L
Sbjct: 122 QSYLLNLIDTPGHVDFRAEVMHSL 145
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 39.9 bits (89), Expect = 2e-04
Identities = 22/58 (37%), Positives = 29/58 (50%)
Frame = +1
Query: 322 NPDQREKSDKGFLINLIASPGHVDFSSEVTAALRVTXXXXXXXXXXXXXXXQTETVLR 495
N Q+ +K + IN+I +PGH+DF+ EV ALRV QT TV R
Sbjct: 134 NEKQKTDFEKSYNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDR 191
Score = 35.1 bits (77), Expect = 0.006
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 59 NFTVDEIRGMMDKKR--NIRNMSVIAHVDHGKSTLTDSLVSKAGII 190
N + E DKKR IRN+ + AH+D GK+T T+ ++ G I
Sbjct: 41 NLNIQEQLNDNDKKRLKQIRNIGISAHIDSGKTTFTERVLYYTGRI 86
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 34.7 bits (76), Expect = 0.008
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = +2
Query: 104 NIRNMSVIAHVDHGKSTLTDSLVSKAG 184
+IRN+ +IAH+D GK+TLT+ ++ G
Sbjct: 27 SIRNVGIIAHIDAGKTTLTEKMLYYGG 53
Score = 28.7 bits (61), Expect = 0.51
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 361 INLIASPGHVDFSSEVTAALRV 426
INLI +PGH DF+ EV ++ V
Sbjct: 95 INLIDTPGHADFTFEVERSVAV 116
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.014
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 89 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 184
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.014
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 89 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 184
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.014
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 89 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 184
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 31.9 bits (69), Expect = 0.055
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 95 KKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGDTRFTDTRKDEQDR 250
KK ++ N+ I HVDHGK+TLT ++ + A D D +E+ R
Sbjct: 50 KKPHV-NIGTIGHVDHGKTTLTAAITKCLSDLGQASFMDYSQIDKAPEEKAR 100
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 29.1 bits (62), Expect = 0.39
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 349 KGFLINLIASPGHVDFSSEVTAALRVT 429
K F I +PGHVDF EV A + ++
Sbjct: 207 KTFAFQCIDTPGHVDFVDEVAAPMAIS 233
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 27.9 bits (59), Expect = 0.90
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 230 RKDEQDRCTPLNLRPSLCSSSLKRKI-*YSSQTLTSVKRVIKVS 358
+KD R +PLN + + S +K+K+ ++S T TS+++ I S
Sbjct: 424 QKDSMRRSSPLNEKVTASSERMKKKLALFASSTDTSMQKTIDSS 467
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 27.9 bits (59), Expect = 0.90
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 116 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGDTR 217
++++ HVDHGK+TL D+ K+ I + G T+
Sbjct: 174 VTLMGHVDHGKTTLLDAF-RKSTIASTEHGGITQ 206
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 26.6 bits (56), Expect = 2.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 455 QSTTTRDPSVTRSAAVTSEEKSTCPGEAIKLIKKPLSL 342
QSTT ++ S+ +A +S E ST G + PL++
Sbjct: 336 QSTTNKNDSLRNTAVESSTEPSTSNGFPATSVSPPLTI 373
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 26.2 bits (55), Expect = 2.7
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = -1
Query: 491 STVSVCTHTPDTQSTTTRDPSVTRSAAVTSEEKSTCPGEAIKLIKKPLSLFSRWSGFVMN 312
S+ S T TP + STT+ S + S ++S S+ A + S S S +
Sbjct: 140 SSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSS-SASSSGSISSAD 198
Query: 311 TKSFSSSSKN 282
K+ S+SS +
Sbjct: 199 AKTVSASSNS 208
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 2.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 113 NMSVIAHVDHGKSTLTDSLVSKAGII 190
N+ I HVD GKSTL +++ G++
Sbjct: 240 NIVFIGHVDAGKSTLGGNILFLTGMV 265
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 26.2 bits (55), Expect = 2.7
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 138 ITASQPSRTRWFPR-PVSLLVREPETPVSLTRVRTNK 245
+T S T + P P S + REP +P+S R+R+++
Sbjct: 48 LTPEPSSNTFYAPSSPASAVRREPLSPMSFVRMRSHR 84
>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
endonuclease Cce1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 258
Score = 25.8 bits (54), Expect = 3.6
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 353 PLSLFSRWSGFVMNTK-SFSSSSKNIEMAVDLM 258
P S +S W+ V+NTK SFS ++M +L+
Sbjct: 168 PKSTYSYWAS-VLNTKASFSKKKSRVQMVKELI 199
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 4.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 109 DIPLLVHHPTDLVYREIHHFRWFMIFVLLNQL 14
D P + +H D ++E H RW + +LLN++
Sbjct: 318 DNPHIHYHYFDF-HKECSHMRWDRVSLLLNEI 348
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 4.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 104 SASCPSSHGSRLP*NSPF*MVYDFCSIK 21
+ASCP SH L + PF + + C IK
Sbjct: 417 TASCPLSHSKLLLEHRPFQTLAEACIIK 444
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 25.4 bits (53), Expect = 4.8
Identities = 18/92 (19%), Positives = 40/92 (43%)
Frame = +2
Query: 107 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGDTRFTDTRKDEQDRCTPLNLRPSLCS 286
+++ I+H++ KS+ + V+ I + + G F+D ++ PS S
Sbjct: 112 VKSPKAISHLEEKKSSPKEKKVNPFAITSESSRGLNPFSDATSANNPFSLSTDVNPSKPS 171
Query: 287 SSLKRKI*YSSQTLTSVKRVIKVS*ST*LPHL 382
S++ K ++++ S+ K T H+
Sbjct: 172 SNVFSKPSFAAKAQQSITDQQKTQAKTKTKHI 203
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 6.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 113 NMSVIAHVDHGKSTLTDSL 169
N+ I HV HGKST+ ++
Sbjct: 25 NIGTIGHVAHGKSTVVKAI 43
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 25.0 bits (52), Expect = 6.3
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +2
Query: 32 KNHKPSKMVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGII 190
K P+ +V+ V EI + K + ++ V HVD GKST+ ++ + G I
Sbjct: 155 KKQNPTDLVS--VPEIFEQSNPKPVV-HLVVTGHVDSGKSTMLGRIMFELGEI 204
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 25.0 bits (52), Expect = 6.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 437 DPSVTRSAAVTSEEKSTCPGEAIKLIKKP 351
D + +AVTSE S EA+K KKP
Sbjct: 516 DGTYATESAVTSEALSAARLEAVKASKKP 544
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 314 NTKSFSSSSKNIEMAVDLM 258
+ KSFSS+S NI+ +DL+
Sbjct: 92 SAKSFSSTSSNIDSNLDLL 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,060,304
Number of Sequences: 5004
Number of extensions: 40252
Number of successful extensions: 145
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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