Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0283
(497 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 127 6e-30
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 1e-04
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.099
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 33 0.17
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 31 0.40
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 31 0.70
SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72) 30 1.2
SB_23513| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 3.7
SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_41266| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_6398| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_32573| Best HMM Match : His_leader (HMM E-Value=0.0014) 27 8.6
SB_29436| Best HMM Match : PAN (HMM E-Value=0.021) 27 8.6
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_3658| Best HMM Match : Keratin_B2 (HMM E-Value=3) 27 8.6
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 127 bits (306), Expect = 6e-30
Identities = 59/66 (89%), Positives = 63/66 (95%)
Frame = +2
Query: 56 VNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGDTRFTDTRK 235
VNFT D+IRG+MDKK NIRNMSVIAHVDHGKSTLTDSLVSKAGIIA A+AG+TRFTDTRK
Sbjct: 1 VNFTTDQIRGIMDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRK 60
Query: 236 DEQDRC 253
DEQDRC
Sbjct: 61 DEQDRC 66
Score = 89.4 bits (212), Expect = 1e-18
Identities = 47/80 (58%), Positives = 55/80 (68%)
Frame = +1
Query: 256 TIKSTAISMFFELEEKDLVFITNPDQREKSDKGFLINLIASPGHVDFSSEVTAALRVTXX 435
TIKSTAIS+++EL E D +IT P ++ ++GFLINLI SPGHVDFSSEVTAALRVT
Sbjct: 68 TIKSTAISLYYELPESDFEYITQP--KDPKERGFLINLIDSPGHVDFSSEVTAALRVTDG 125
Query: 436 XXXXXXXXXXXXXQTETVLR 495
QTETVLR
Sbjct: 126 ALVVVDCVSGVCVQTETVLR 145
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/48 (41%), Positives = 32/48 (66%)
Frame = +2
Query: 107 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGDTRFTDTRKDEQDR 250
+RN S++AHVDHGKSTL D L+ G I+ + + + + D + E++R
Sbjct: 1941 VRNFSIVAHVDHGKSTLADRLLEVTGTISKS-SDNKQVLDKLQVERER 1987
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 33.5 bits (73), Expect = 0.099
Identities = 19/85 (22%), Positives = 38/85 (44%)
Frame = +2
Query: 53 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGDTRFTDTR 232
+ N+ ++ + +MD IRN+++ H+ GK+ D L + A+ G +T
Sbjct: 112 LTNYNIEYLADLMDNPELIRNVALAGHLHSGKTAFLDCLFEQTHPELEAKEGKEVMLNTE 171
Query: 233 KDEQDRCTPLNLRPSLCSSSLKRKI 307
+ NL ++C + + R I
Sbjct: 172 R-LLKHAVQENLAITICINKIDRLI 195
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.7 bits (71), Expect = 0.17
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 116 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGDTR 217
++++ HVDHGK+TL D+L + + AG G T+
Sbjct: 31 VTIMGHVDHGKTTLLDAL-RNSSVAAGEAGGITQ 63
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 32.7 bits (71), Expect = 0.17
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 89 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 184
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 31.5 bits (68), Expect = 0.40
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 116 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGDTR 217
++V+ HVDHGK++L D + A +I G G T+
Sbjct: 94 VTVMGHVDHGKTSLLD-YIRNANVIEGESGGITQ 126
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 30.7 bits (66), Expect = 0.70
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 92 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA 205
D+ + R +I+H D GK+TLT+ L+ G I A A
Sbjct: 5 DEIKRRRTFGIISHPDAGKTTLTEKLLLFGGAIQEAGA 42
>SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)
Length = 300
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 434 PSVTRSAAVTSEEKSTCPGEAIKLIKKPLSLFSRWSGFVMN 312
P R A TCPGE ++L+ + L +RWS V+N
Sbjct: 242 PPPERQALACLRHTHTCPGEQLRLVGQ-LGHRARWSSSVIN 281
>SB_23513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 146 KSTLTDSLVSKAGIIAGARAGDTRFTDTRKDEQDRCTPLNL-RPSLCSSSLKR 301
K+ + D+LV GI+ R G +TD + +R T R SL +++LKR
Sbjct: 182 KTLIKDNLVGPKGIVVDPRTGLMFWTDKETPKIERATLAGRDRISLVTTALKR 234
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -1
Query: 305 SFSSSSKNIEMAVDLMVCNGLVRPYACQ 222
++ SS+K +A+ +M+C+G RPY CQ
Sbjct: 740 TYLSSTK--ALALHMMLCHGTWRPYQCQ 765
>SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -1
Query: 473 THTPDTQSTTTRDPSVTRSAAVTSEEKST 387
T TP+TQSTTT T+S T E +ST
Sbjct: 346 TETPETQSTTTTPE--TQSTTTTPETQST 372
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -1
Query: 473 THTPDTQSTTTRDPSVTRSAAVTSEEKST 387
T TP+TQSTTT T+S T E +ST
Sbjct: 391 TETPETQSTTTTPE--TQSTTGTPETQST 417
>SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/18 (66%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
Frame = -1
Query: 482 SVCTHTPDTQSTT-TRDP 432
++ T TP+TQSTT TRDP
Sbjct: 90 TITTETPETQSTTDTRDP 107
>SB_41266| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 660
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/18 (66%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
Frame = -1
Query: 482 SVCTHTPDTQSTT-TRDP 432
++ T TP+TQSTT TRDP
Sbjct: 90 TITTETPETQSTTDTRDP 107
>SB_6398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/18 (66%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
Frame = -1
Query: 482 SVCTHTPDTQSTT-TRDP 432
++ T TP+TQSTT TRDP
Sbjct: 11 TITTETPETQSTTDTRDP 28
>SB_32573| Best HMM Match : His_leader (HMM E-Value=0.0014)
Length = 134
Score = 27.1 bits (57), Expect = 8.6
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = -2
Query: 145 AVIDVGDHRHVADIPLLVHHPTDLVYREIHH 53
++I + H H + +++HHP+ ++ HH
Sbjct: 27 SIIIIHHHHHPSSSIIIIHHPSSIIIIIHHH 57
>SB_29436| Best HMM Match : PAN (HMM E-Value=0.021)
Length = 419
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -1
Query: 473 THTPDTQSTTTRDPSVTRSAAVTSEEKST 387
T TP+TQSTT D T+S T E +ST
Sbjct: 143 TETPETQSTT--DTPETQSPTQTPETQST 169
>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3592
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 85 DDGQEAEYPQHVCDRPRRSRQVNPHGLVGFQ-GRYHCWCESRRHPFH*HA*GR 240
DDG+ ++ CDRPR + G++ G H C ++ H + GR
Sbjct: 2495 DDGKLGHGNRNSCDRPRVIEALRGKGVIDISCGGSHSACITQNHELYTWGKGR 2547
>SB_3658| Best HMM Match : Keratin_B2 (HMM E-Value=3)
Length = 138
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 206 GDTRFTDTRKDEQDRCTPLNLRPSLCSSSLKRKI*YSS 319
G +++ + +D Q C LRP+ C SS R YSS
Sbjct: 24 GTSKYENWCRDYQKLCESYGLRPTGCGSSYLRIHDYSS 61
>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1864
Score = 27.1 bits (57), Expect = 8.6
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Frame = -1
Query: 473 THTPDTQSTTTRDPSVTRSAAVTSEEKSTCPGEAIKL---IKKPLSLFSRWSGFVMNTKS 303
TH+P + TTT P+ E C G+ ++L K +L R+ G
Sbjct: 612 THSPSSTPTTTGAPTTAGFNEFNLEASEDCTGDYVELRDGDSKSAALIGRYCGTNAPMML 671
Query: 302 FSSSSK 285
SS K
Sbjct: 672 MGSSDK 677
>SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2937
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 206 GDTRFTDTRKDEQDRCTPLNLRPSLCSSSLKRKI*YSS 319
G +++ + +D Q C LRP+ C SS R YSS
Sbjct: 1696 GTSKYENWCRDYQKLCESYGLRPTGCGSSYLRIHDYSS 1733
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,042,862
Number of Sequences: 59808
Number of extensions: 335411
Number of successful extensions: 1377
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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