Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0283
         (497 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    33   0.002
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    33   0.002
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    29   0.020
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.33 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   3.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   5.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   5.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   5.4  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   5.4  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   7.1  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 32.7 bits (71), Expect = 0.002
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +2

Query: 89  MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 184
           M K++   N+ VI HVD GKST T  L+ K G
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 32.7 bits (71), Expect = 0.002
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +2

Query: 89  MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 184
           M K++   N+ VI HVD GKST T  L+ K G
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 29.5 bits (63), Expect = 0.020
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +2

Query: 116 MSVIAHVDHGKSTLTDSL 169
           ++++ HVDHGK+TL D+L
Sbjct: 148 VTIMGHVDHGKTTLLDAL 165


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 113 NMSVIAHVDHGKSTLTDSL 169
           N+  I HV HGKST+  ++
Sbjct: 44  NIGTIGHVAHGKSTIVKAI 62


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 94  VHHPTDLVYREIHH 53
           +HHP   + R++HH
Sbjct: 400 LHHPNCKINRKVHH 413


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 274 ISMFFELEEKDLVFITNPDQREKSDKGFLI 363
           ++MF+     D+  I+N +Q + S  GF I
Sbjct: 527 LNMFYNNFNSDIKSISNNEQVKVSALGFFI 556


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -1

Query: 458 TQSTTTRDP-SVTRSAAVTSEEKSTC 384
           + STTT  P + T+S  V +   STC
Sbjct: 324 SSSTTTTSPMTSTKSTIVRNHLNSTC 349


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 475 VHTHQTHSQQLQGIHQ 428
           +HT   H Q  QG HQ
Sbjct: 172 MHTQHPHMQPQQGQHQ 187


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 274 ISMFFELEEKDLVFITNPDQREKSDKGFLI 363
           ++MF+     D+  I+N +Q + S  GF I
Sbjct: 527 LNMFYNNFNSDIKSISNNEQVKVSALGFFI 556


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = -3

Query: 495 TQYCFSLYTHTRHTVNNYKGSISDTECSCYFRREINVSR 379
           T  C S Y  +RH   N   +  +  CS    RE    R
Sbjct: 227 TSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKDR 265


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,945
Number of Sequences: 438
Number of extensions: 3122
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)