Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0280
(705 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.092
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.49
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.65
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 26 4.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 6.0
SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|... 26 6.0
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 26 6.0
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 25 8.0
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 25 8.0
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.9 bits (69), Expect = 0.092
Identities = 24/70 (34%), Positives = 29/70 (41%)
Frame = +3
Query: 6 GCPKAPRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQP 185
G P P+ A A P A S PKP+ A P + P+P AG P P P
Sbjct: 1138 GAPPVPKPSVA-APPVPAPSGA--PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPP 1194
Query: 186 LLAPRSFPRP 215
AP P+P
Sbjct: 1195 SEAP-PVPKP 1203
Score = 30.7 bits (66), Expect = 0.21
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 87 PKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQPLLAPRS 203
P P AP + P+P + +G PSAP P+ AP S
Sbjct: 1033 PIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSS 1071
Score = 29.5 bits (63), Expect = 0.49
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +3
Query: 87 PKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQPLLAPRSFPRP 215
PKP+ VAAP V + A P+P P P P AP P+P
Sbjct: 1124 PKPS-VAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAP-PVPKP 1164
Score = 29.1 bits (62), Expect = 0.65
Identities = 20/64 (31%), Positives = 25/64 (39%)
Frame = +3
Query: 6 GCPKAPRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQP 185
G P P+ P+ A P + PKPA P + A P+P G P P P
Sbjct: 1157 GAPPVPK--PSVAAPPVPAPSSGIPPVPKPA-AGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
Query: 186 LLAP 197
AP
Sbjct: 1214 STAP 1217
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/55 (29%), Positives = 21/55 (38%)
Frame = +3
Query: 33 PANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQPLLAP 197
P + P SK + P P + + A P+PL A P P P AP
Sbjct: 987 PKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAP 1041
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = +3
Query: 87 PKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQPLLAPRSFPRP 215
PKP+ V P + A P+P AG P P P P P
Sbjct: 1201 PKPS-VGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 25.4 bits (53), Expect = 8.0
Identities = 19/68 (27%), Positives = 26/68 (38%)
Frame = +3
Query: 12 PKAPRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQPLL 191
PK+ P+ P A S S P P+ AP + P+P P P+P +
Sbjct: 1053 PKSSSGAPSAPPPVPAPSSEIPS-IPAPS--GAPPVPAPSGIPPVPKPSVAAPPVPKPSV 1109
Query: 192 APRSFPRP 215
A P P
Sbjct: 1110 AVPPVPAP 1117
Score = 25.4 bits (53), Expect = 8.0
Identities = 20/70 (28%), Positives = 28/70 (40%)
Frame = +3
Query: 6 GCPKAPRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQP 185
G P P+ P+ A P P P+ A P A P+P+ +G P P+P
Sbjct: 1090 GIPPVPK--PSVAAPPVPKPSVAVPPVPAPSG-APPVPKPSVAAPPVPVP-SGAPPVPKP 1145
Query: 186 LLAPRSFPRP 215
+A P P
Sbjct: 1146 SVAAPPVPAP 1155
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.49
Identities = 18/58 (31%), Positives = 20/58 (34%)
Frame = +3
Query: 12 PKAPRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQP 185
P AP P +A P P A +A P A PLP P AP P
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.1 bits (62), Expect = 0.65
Identities = 22/66 (33%), Positives = 29/66 (43%)
Frame = +3
Query: 12 PKAPRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQPLL 191
P P P RP++A + +P P ++ P A P+P AG PSAP P L
Sbjct: 1683 PAHPVSTPP-VRPQSAAPPQMSAPTPPPPPMSVPPPPS---APPMP---AGPPSAPPPPL 1735
Query: 192 APRSFP 209
S P
Sbjct: 1736 PASSAP 1741
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 26.2 bits (55), Expect = 4.6
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 33 PANARPKTAGSKT-FESRSPKPAFVAAPXSTVF-AWAKPLPLT 155
P N P + T FES+SP P + P T A +K +PL+
Sbjct: 598 PFNKFPNSVSRNTHFESKSPHPNYSRTPHETYSKASSKNVPLS 640
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 6.0
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +3
Query: 12 PKAPRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAG-EPSAPQPL 188
P P PA+A P + + S P PA AAP + + A LP + P P P
Sbjct: 147 PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPS-APSLPSAVPPMPPKVPPPP 205
Query: 189 LA 194
L+
Sbjct: 206 LS 207
>SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 405
Score = 25.8 bits (54), Expect = 6.0
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 111 PXSTVFAWAKPLPLTMAGEPSAPQPLLAPRSFPRP-FN 221
P T+F W PLPL A P+ LA RSF P FN
Sbjct: 87 PSITIF-WT-PLPLVKAMYALEPKLCLAKRSFVAPSFN 122
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -2
Query: 284 FNAMESNINKNW---ESYKVVSLNVKRARERPGREQGLGCRWLTC 159
F + S++N+N + K + + R+ + P RE+GL C L C
Sbjct: 505 FENITSSLNENLYMVDMLKTLIIPAVRSHDLPIREKGLECLSLVC 549
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.4 bits (53), Expect = 8.0
Identities = 19/56 (33%), Positives = 23/56 (41%)
Frame = +3
Query: 48 PKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQPLLAPRSFPRP 215
P A S + E+ P F P S+ + P T A P A PLL S P P
Sbjct: 16 PGRANSSSREAVDSSPLFF--PASSPGSTRLTTPRTTARTPLASSPLLFESSSPGP 69
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +3
Query: 213 PFNV*RDHFITFPILVYVTFHCIKMFCLI 299
P N F+ F IL T H + FC++
Sbjct: 497 PLNYIMSPFVGFSILTAATIHMLLKFCVV 525
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,633,876
Number of Sequences: 5004
Number of extensions: 49113
Number of successful extensions: 135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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