Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0280
(705 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4101| Best HMM Match : SRP19 (HMM E-Value=9.7) 36 0.032
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4) 35 0.056
SB_19610| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.91
SB_10217| Best HMM Match : ubiquitin (HMM E-Value=1.6e-06) 31 0.91
SB_10926| Best HMM Match : Pkinase (HMM E-Value=3e-24) 30 2.1
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 30 2.1
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23) 30 2.1
SB_24434| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18) 29 3.7
SB_35265| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_21284| Best HMM Match : F5_F8_type_C (HMM E-Value=1.8e-21) 29 4.9
SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_25760| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_435| Best HMM Match : zf-CCHC (HMM E-Value=2) 28 6.4
SB_39599| Best HMM Match : Extensin_2 (HMM E-Value=0.09) 28 6.4
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_50183| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 8.5
SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35) 28 8.5
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09) 28 8.5
SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_21830| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_4101| Best HMM Match : SRP19 (HMM E-Value=9.7)
Length = 699
Score = 35.9 bits (79), Expect = 0.032
Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Frame = +1
Query: 55 PPALRLLSPDRRNLLSWRLRXPPSSRGLNRCRSR-------WQVSHRHPNPCSRPGRSRA 213
PP L ++ PDRR L + + P + G NR R W VS + PN RPGR R
Sbjct: 132 PPVLEMVDPDRRYRL-FTVVGPRRAIGANRRGGRALGAQDWWFVSQKRPNRSRRPGRYRC 190
Query: 214 RLTFNETT 237
F E T
Sbjct: 191 GY-FGERT 197
>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
Length = 1439
Score = 35.1 bits (77), Expect = 0.056
Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +3
Query: 33 PANARPKTAGS--KTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQP-LLAPRS 203
PA A P F S S P V AP +VFA + +P +A P AP P + AP S
Sbjct: 353 PATAPPPVVAPPPSVFASSSGVPTPVKAPPPSVFASSSGVPTPVAAPPPAPPPSVFAPSS 412
Query: 204 -FPRP 215
P P
Sbjct: 413 GVPTP 417
Score = 34.3 bits (75), Expect = 0.098
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 72 FESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQP-LLAPRS-FPRP 215
F S P VAAP +VFA + +P T+ P+AP P + AP S P P
Sbjct: 484 FAPSSGVPTPVAAPPPSVFAPSSGVPTTVTAPPAAPPPSVFAPSSGVPTP 533
Score = 31.5 bits (68), Expect = 0.69
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 72 FESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQP-LLAPRS-FPRP 215
F S P VAAP +VFA + +P + P AP P + AP S P P
Sbjct: 426 FAPSSGVPTPVAAPPPSVFASSSGVPTPVTAPPPAPPPSVFAPSSGVPTP 475
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/69 (33%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Frame = +3
Query: 33 PANARPKTAGSKTFESRSPKPAFVAAPXSTVFA--------WAKPLPLTMAGEPSAPQPL 188
P A P F S P VAAP +VFA A P P A P P+
Sbjct: 395 PVAAPPPAPPPSVFAPSSGVPTPVAAPPPSVFAPSSGVPTPVAAPPPSVFASSSGVPTPV 454
Query: 189 LAPRSFPRP 215
AP P P
Sbjct: 455 TAPPPAPPP 463
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +3
Query: 33 PANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEP 170
P A P F S P VAAP +VFA + +P +A P
Sbjct: 453 PVTAPPPAPPPSVFAPSSGVPTPVAAPPPSVFAPSSGVPTPVAAPP 498
>SB_19610| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 31.1 bits (67), Expect = 0.91
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 7 DAPRPRGSARPTRAPKPPALRLLSPDRRN-LLSWRLRXPPSSRG 135
D PRG+ P R P P + + SPD N PPSS+G
Sbjct: 241 DVDGPRGAPPPYRMPPPAGVHVSSPDGSNQYYPSSYGRPPSSQG 284
>SB_10217| Best HMM Match : ubiquitin (HMM E-Value=1.6e-06)
Length = 479
Score = 31.1 bits (67), Expect = 0.91
Identities = 23/81 (28%), Positives = 31/81 (38%)
Frame = +3
Query: 30 CPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQPLLAPRSFP 209
CP + T + T P PA A P + V P P G P+ P F
Sbjct: 88 CPPSPSHSTPTTPTPPLSQPSPASSATP-TRVPDSTSPTPAQADGLRHRGTPMQTPSPFN 146
Query: 210 RPFNV*RDHFITFPILVYVTF 272
P + + HF+ P V +TF
Sbjct: 147 YPLGLPQMHFMQHPQHVGLTF 167
>SB_10926| Best HMM Match : Pkinase (HMM E-Value=3e-24)
Length = 1102
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/61 (22%), Positives = 29/61 (47%)
Frame = -3
Query: 244 VIKWSR*TLNGRGNDRGASRGWGADGSPAIVSGSGLAHAKTVXSGAATKAGFGDRDSKVL 65
+I ++ LNG D+G G G + + +G+G+ + + +G + G G + +
Sbjct: 924 IIFYTAARLNGNSFDKGMENGAGMENGAGMENGAGMENGAGMENGGGMENGAGMENGAGM 983
Query: 64 E 62
E
Sbjct: 984 E 984
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 29.9 bits (64), Expect = 2.1
Identities = 26/70 (37%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Frame = +1
Query: 13 PRPRGSARPTRAPKPPALRLLSPDRRNLLSWRLRXPPSSRGLNRCRSRWQVSHRHPNPCS 192
PRPR R P PP RR WR R PP RG R + P P
Sbjct: 1236 PRPRDVRPAYRRPSPP--------RRRPQQWR-RSPPRFRGGGGFRPMRRSRSGSPPPRR 1286
Query: 193 R--PGRSRAR 216
R P RSR+R
Sbjct: 1287 RRSPSRSRSR 1296
>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
Length = 4240
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +3
Query: 15 KAPRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFA-WAKPLPLTMAGEPSAPQPLL 191
+ P+ A +P + T E R +P+ P S+ A + +P T+AGE +PQP L
Sbjct: 813 QTPQGTSAQPKPSQQPNSTSEPRPQQPS---QPKSSAQASYKEPPKPTLAGEKMSPQPQL 869
Query: 192 ---APRS 203
AP+S
Sbjct: 870 TMTAPKS 876
>SB_24434| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1194
Score = 29.5 bits (63), Expect = 2.8
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +3
Query: 3 RGCPKAPRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQ 182
+ P P A A P ++ PKP +AA S P P +A + S P+
Sbjct: 953 KASPPKPFVLAAKASPPKPFVLAAKASPPKPFVLAAKASP------PKPFVLAAKASPPK 1006
Query: 183 P--LLAPRSFPRPF 218
P L A S P+PF
Sbjct: 1007 PFVLAAKASPPKPF 1020
Score = 29.5 bits (63), Expect = 2.8
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +3
Query: 3 RGCPKAPRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQ 182
+ P P A A P ++ PKP +AA S P P +A + S P+
Sbjct: 965 KASPPKPFVLAAKASPPKPFVLAAKASPPKPFVLAAKASP------PKPFVLAAKASPPK 1018
Query: 183 P--LLAPRSFPRPF 218
P L A S P+PF
Sbjct: 1019 PFVLAAKASPPKPF 1032
Score = 29.5 bits (63), Expect = 2.8
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +3
Query: 3 RGCPKAPRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQ 182
+ P P A A P ++ PKP +AA S P P +A + S P+
Sbjct: 977 KASPPKPFVLAAKASPPKPFVLAAKASPPKPFVLAAKASP------PKPFVLAAKASPPK 1030
Query: 183 P--LLAPRSFPRPF 218
P L A S P+PF
Sbjct: 1031 PFVLAAKASPPKPF 1044
Score = 29.5 bits (63), Expect = 2.8
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +3
Query: 3 RGCPKAPRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQ 182
+ P P A A P ++ PKP +AA S P P +A + S P+
Sbjct: 989 KASPPKPFVLAAKASPPKPFVLAAKASPPKPFVLAAKASP------PKPFVLAAKASPPK 1042
Query: 183 P--LLAPRSFPRPF 218
P L A S P+PF
Sbjct: 1043 PFVLAAKASPPKPF 1056
Score = 29.5 bits (63), Expect = 2.8
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +3
Query: 3 RGCPKAPRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQ 182
+ P P A A P ++ PKP +AA S P P +A + S P+
Sbjct: 1001 KASPPKPFVLAAKASPPKPFVLAAKASPPKPFVLAAKASP------PKPFVLAAKASPPK 1054
Query: 183 P--LLAPRSFPRPF 218
P L A S P+PF
Sbjct: 1055 PFVLAAKASPPKPF 1068
Score = 29.5 bits (63), Expect = 2.8
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +3
Query: 3 RGCPKAPRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQ 182
+ P P A A P ++ PKP +AA S P P +A + S P+
Sbjct: 1013 KASPPKPFVLAAKASPPKPFVLAAKASPPKPFVLAAKASP------PKPFVLAAKASPPK 1066
Query: 183 P--LLAPRSFPRPF 218
P L A S P+PF
Sbjct: 1067 PFVLAAKASPPKPF 1080
Score = 29.5 bits (63), Expect = 2.8
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +3
Query: 3 RGCPKAPRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQ 182
+ P P A A P ++ PKP +AA S P P +A + S P+
Sbjct: 1025 KASPPKPFVLAAKASPPKPFVLAAKASPPKPFVLAAKASP------PKPFVLAAKASPPK 1078
Query: 183 P--LLAPRSFPRPF 218
P L A S P+PF
Sbjct: 1079 PFVLAAKASPPKPF 1092
Score = 29.5 bits (63), Expect = 2.8
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +3
Query: 3 RGCPKAPRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQ 182
+ P P A A P ++ PKP +AA S P P +A + S P+
Sbjct: 1037 KASPPKPFVLAAKASPPKPFVLAAKASPPKPFVLAAKASP------PKPFVLAAKASPPK 1090
Query: 183 P--LLAPRSFPRPF 218
P L A S P+PF
Sbjct: 1091 PFVLAAKASPPKPF 1104
Score = 29.5 bits (63), Expect = 2.8
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +3
Query: 3 RGCPKAPRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQ 182
+ P P A A P ++ PKP +AA S P P +A + S P+
Sbjct: 1049 KASPPKPFVLAAKASPPKPFVLAAKASPPKPFVLAAKASP------PKPFVLAAKASPPK 1102
Query: 183 P--LLAPRSFPRPF 218
P L A S P+PF
Sbjct: 1103 PFVLAAKASPPKPF 1116
Score = 29.5 bits (63), Expect = 2.8
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +3
Query: 3 RGCPKAPRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQ 182
+ P P A A P ++ PKP +AA S P P +A + S P+
Sbjct: 1061 KASPPKPFVLAAKASPPKPFVLAAKASPPKPFVLAAKASP------PKPFVLAAKASPPK 1114
Query: 183 P--LLAPRSFPRPF 218
P L A S P+PF
Sbjct: 1115 PFVLAAKASPPKPF 1128
Score = 29.5 bits (63), Expect = 2.8
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +3
Query: 3 RGCPKAPRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQ 182
+ P P A A P ++ PKP +AA S P P +A + S P+
Sbjct: 1073 KASPPKPFVLAAKASPPKPFVLAAKASPPKPFVLAAKASP------PKPFVLAAKASPPK 1126
Query: 183 P--LLAPRSFPRPF 218
P L A S P+PF
Sbjct: 1127 PFVLAAKASPPKPF 1140
Score = 29.5 bits (63), Expect = 2.8
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +3
Query: 3 RGCPKAPRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQ 182
+ P P A A P ++ PKP +AA S P P +A + S P+
Sbjct: 1085 KASPPKPFVLAAKASPPKPFVLAAKASPPKPFVLAAKASP------PKPFVLAAKASPPK 1138
Query: 183 P--LLAPRSFPRPF 218
P L A S P+PF
Sbjct: 1139 PFVLAAKASPPKPF 1152
Score = 29.5 bits (63), Expect = 2.8
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +3
Query: 3 RGCPKAPRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQ 182
+ P P A A P ++ PKP +AA S P P +A + S P+
Sbjct: 1097 KASPPKPFVLAAKASPPKPFVLAAKASPPKPFVLAAKASP------PKPFVLAAKASPPK 1150
Query: 183 P--LLAPRSFPRPF 218
P L A S P+PF
Sbjct: 1151 PFVLAAKASPPKPF 1164
Score = 29.5 bits (63), Expect = 2.8
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +3
Query: 3 RGCPKAPRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQ 182
+ P P A A P ++ PKP +AA S P P +A + S P+
Sbjct: 1109 KASPPKPFVLAAKASPPKPFVLAAKASPPKPFVLAAKASP------PKPFVLAAKASPPK 1162
Query: 183 P--LLAPRSFPRPF 218
P L A S P+PF
Sbjct: 1163 PFVLAAKASPPKPF 1176
Score = 29.1 bits (62), Expect = 3.7
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 12 PKAPRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQP-- 185
P P A A P ++ PKP +AA S P P +A + S P+P
Sbjct: 944 PPKPFVLAAKASPPKPFVLAAKASPPKPFVLAAKASP------PKPFVLAAKASPPKPFV 997
Query: 186 LLAPRSFPRPF 218
L A S P+PF
Sbjct: 998 LAAKASPPKPF 1008
>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
Length = 1425
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = -3
Query: 214 GRGNDRGASRGWGADGSPAIVSGSGLAHAKTVXSGAATKAG 92
GRG RG RG G GSP +G + KAG
Sbjct: 1374 GRGRGRGRGRGRGQQGSPVSKGEAGSRQKRDRTHSTPKKAG 1414
>SB_35265| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/39 (33%), Positives = 28/39 (71%)
Frame = +1
Query: 343 ILIIETIYNVIIVLFLTLISVLMSEFIAFVIRLYKVLVF 459
I+II I+NVII++F+ +I+V+++ I + + +++F
Sbjct: 206 IIIIVIIFNVIIIVFI-IINVIITIIIIVNVIIITIIIF 243
>SB_21284| Best HMM Match : F5_F8_type_C (HMM E-Value=1.8e-21)
Length = 564
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +1
Query: 343 ILIIETIYNVIIVLFLTLISVLMSEFIAFVIRLYKVLVFYG*NHQSSQDSARGYNATLSS 522
ILII TI IIV+F+ +I +++ I +I + V H Q Y + S
Sbjct: 352 ILIIITIIITIIVVFIIIIIIIIIIIIIIIIIMINVNECVETAHNCQQKCNNDYGSYHCS 411
Query: 523 C 525
C
Sbjct: 412 C 412
>SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2973
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Frame = +1
Query: 37 PTRAPKPPALRLLSPDR----RNLLSWRLRXPPSSRGLNRCRSRWQVSHRHPNPCSRPGR 204
P R P+PPA R P R R L W+ + + + H +RP R
Sbjct: 1064 PARTPEPPATRPKHPGRVEAGRRLAEWKRLNRAKKKAVQHAAKQNYKDHHRRRSHNRPRR 1123
Query: 205 SR 210
R
Sbjct: 1124 RR 1125
>SB_25760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +1
Query: 340 NILIIETIYNVIIVLFLTLISVLMSEFIAFVIRLYKVLV 456
NI+II I V+IVL + ++SV++ + +I + V+V
Sbjct: 5 NIIIIIVIVVVVIVLIVIVVSVIIIVVVIVLINIVIVIV 43
>SB_435| Best HMM Match : zf-CCHC (HMM E-Value=2)
Length = 913
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 458 SMGRITSLRRTLPEVIMLRYPAVSCDGVVLFKRS*RGYRTT*Q*LVPDRSQCSRRGCV 631
++G I++ R + + R P + G L R R TT Q + QCSR GC+
Sbjct: 75 AVGDISARTREISAEDVQRRPVIPFGGPALSARLTRADSTTSQSTTVEGRQCSRIGCL 132
>SB_39599| Best HMM Match : Extensin_2 (HMM E-Value=0.09)
Length = 564
Score = 28.3 bits (60), Expect = 6.4
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Frame = +1
Query: 4 ADAPRP-----RGSARPTRAPKPPALRL-LSPDRRNLLSWRLRXPPSSRGLNRCRSRWQV 165
A+AP P R + P P P L + P R LL + P SR RS W
Sbjct: 56 ANAPHPTPLDTRVTNGPPGLPMHPTPPLSIHPSRTELLDCQCTLPHPSRYTPHGRSSWLA 115
Query: 166 SHRHPNPCSRP 198
+ +P P P
Sbjct: 116 NAPYPTPLDTP 126
>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 28.3 bits (60), Expect = 6.4
Identities = 24/66 (36%), Positives = 30/66 (45%)
Frame = +1
Query: 1 TADAPRPRGSARPTRAPKPPALRLLSPDRRNLLSWRLRXPPSSRGLNRCRSRWQVSHRHP 180
TA A P GS R + +P PALR +L P+SR R RSR + R P
Sbjct: 166 TAAAGTPAGSRRSSISPASPALR---SSLGSLAPTSRTSTPTSRSTPRSRSRSRA--RTP 220
Query: 181 NPCSRP 198
+ S P
Sbjct: 221 STPSTP 226
>SB_50183| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 717
Score = 27.9 bits (59), Expect = 8.5
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Frame = +3
Query: 21 PRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPL--TMAGEPSAPQPLLA 194
P K P P + + + R P A P + F ++P P+ + P P LL
Sbjct: 169 PLKSPTERGPVYSRPEVPQQRGPSMAS-PHPYTLPFVTSQPSPVHHVIINNPMPPSHLLP 227
Query: 195 PRSFPRPFNV*RDHF 239
+PRP HF
Sbjct: 228 AHGWPRPTIAVDPHF 242
>SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)
Length = 1049
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +3
Query: 537 VSYSLSVPDVATGPPSNN*FRIV-RSVRDV 623
+ +LS P++ PP+N +++V +SVRD+
Sbjct: 273 IETALSAPEIVLSPPANEIYKLVMQSVRDM 302
>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
Length = 787
Score = 27.9 bits (59), Expect = 8.5
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +3
Query: 15 KAPRKCPANARPKTAGS-KTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQPLL 191
KAPRK +RP+TA + S+S V P + A PL PS P L
Sbjct: 229 KAPRKSHRQSRPRTASTCSNASSKSEGDNCVFQPSARSGAPKAKKPLLTL--PSTPNVLK 286
Query: 192 APRSFPR 212
P+ P+
Sbjct: 287 RPKMKPK 293
>SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +1
Query: 55 PPALRLLSPDRRNLLSWRLRXPPSSRGLNRCRSRWQVSHRHPNPCSRPGRSR 210
PP+L + PD+R ++S + P + G+N C+ SHR C R +R
Sbjct: 361 PPSLENI-PDKRKMVSLIMEQPGPTNGIN-CQ-----SHRQKISCKRSSANR 405
>SB_21830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = +1
Query: 340 NILIIETIYNVIIVLFLTLISVLMSEFIAFVIRLYKVLV 456
NI+II I N+II++ + +I +++ I +I + +++
Sbjct: 211 NIIIIIIIINIIIIIIIIIIIIIIIIIITTIIIIIIIII 249
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,500,322
Number of Sequences: 59808
Number of extensions: 407237
Number of successful extensions: 1508
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1497
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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