Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0280
(705 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81104-3|CAD89749.1| 660|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z81529-4|CAB04295.1| 272|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z68213-3|CAA92438.1| 223|Caenorhabditis elegans Hypothetical pr... 29 2.4
U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical pr... 29 2.4
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 29 2.4
Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z70756-12|CAA94796.2| 180|Caenorhabditis elegans Hypothetical p... 28 5.7
Z31590-4|CAD27606.1| 495|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z31590-3|CAD27605.1| 607|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z31590-2|CAD27604.1| 538|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z31590-1|CAA83461.1| 605|Caenorhabditis elegans Hypothetical pr... 28 5.7
AL132898-2|CAC14413.1| 349|Caenorhabditis elegans Hypothetical ... 28 5.7
Z49909-15|CAF31470.1| 697|Caenorhabditis elegans Hypothetical p... 28 7.5
Z49909-14|CAA90116.2| 717|Caenorhabditis elegans Hypothetical p... 28 7.5
U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical pr... 28 7.5
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 28 7.5
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 28 7.5
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 28 7.5
AC084152-9|AAK39313.1| 296|Caenorhabditis elegans Hypothetical ... 28 7.5
Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z82096-7|CAB05033.2| 332|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 27 9.9
U39674-6|AAA80416.1| 291|Caenorhabditis elegans Hypothetical pr... 27 9.9
>Z81104-3|CAD89749.1| 660|Caenorhabditis elegans Hypothetical
protein M199.5 protein.
Length = 660
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -3
Query: 214 GRGNDRGASRGWGADGSPAIVSGSGLAHAKTVXSGAATKAGFGDRDSK 71
G D+GA GADG+P G AK +K GD+ K
Sbjct: 193 GPKGDKGADGAKGADGTPGSKGDKGSDGAKGADGNPGSKGDTGDKGEK 240
>Z81529-4|CAB04295.1| 272|Caenorhabditis elegans Hypothetical
protein F35E8.6 protein.
Length = 272
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = +3
Query: 3 RGCPKAPRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLT 155
+ C K ++CPA AG T + +P P A V A P T
Sbjct: 182 KNCQKTCKRCPATTAAPAAGVTTTAAPAPVPVVPTAAPPAVVTTAAPATCT 232
>Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical
protein C36A4.5 protein.
Length = 954
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Frame = +3
Query: 3 RGCPKAPRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLT----MAGEP 170
RG P K A A+ K AG + S + V+AP +T A P T +P
Sbjct: 404 RGAPAKAAKAEAIAQKKVAGKVQRAAPSKPASAVSAPKATAPASTSSAPATAPEASRRDP 463
Query: 171 SAPQPLLAPRSFPRPFN 221
S +L FP FN
Sbjct: 464 SDVTIVLDDSLFPEDFN 480
>Z68213-3|CAA92438.1| 223|Caenorhabditis elegans Hypothetical
protein C01F6.5 protein.
Length = 223
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 12 PKAPRKCPANARPKTAGSKTFESRSPKP 95
P+APR+ P+N RP K +S KP
Sbjct: 157 PEAPRRAPSNGRPAQRAPKRQNVKSGKP 184
>U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical
protein ZK84.1 protein.
Length = 801
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/67 (26%), Positives = 22/67 (32%)
Frame = +3
Query: 15 KAPRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQPLLA 194
+ P PA E+ +P PA P + A P P A E AP P
Sbjct: 561 ETPAPAPAAEETPAPAPAAEETPAPAPAAEETPATAPAAEETPAPAPAADETPAPAPAAE 620
Query: 195 PRSFPRP 215
P P
Sbjct: 621 ETPAPAP 627
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/67 (31%), Positives = 25/67 (37%)
Frame = +3
Query: 15 KAPRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQPLLA 194
+ P PA E+ +P PA P S A P P A E AP P A
Sbjct: 669 ETPAPAPAAEETPAPAQAAEETPAPAPAAEETPASAPAAEETPAPAPAAEEAPAPAP-AA 727
Query: 195 PRSFPRP 215
P + P P
Sbjct: 728 PET-PAP 733
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/67 (25%), Positives = 21/67 (31%)
Frame = +3
Query: 15 KAPRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQPLLA 194
+ P PA E+ +P PA P A P P E AP P +
Sbjct: 581 ETPAPAPAAEETPATAPAAEETPAPAPAADETPAPAPAAEETPAPAPAVEETPAPAPAVE 640
Query: 195 PRSFPRP 215
P P
Sbjct: 641 ETPAPAP 647
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +3
Query: 108 APXSTVFAWAKPLPLTM--AGEPSAPQPLLAPRSFPRPFN 221
AP T + P+ + + A +P P+P APR PRP+N
Sbjct: 1981 APQPTTYQRPHPIKVQVRPATKPYRPRPSPAPRIQPRPYN 2020
>Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical
protein F28C1.1 protein.
Length = 672
Score = 29.1 bits (62), Expect = 3.2
Identities = 22/67 (32%), Positives = 27/67 (40%)
Frame = +1
Query: 16 RPRGSARPTRAPKPPALRLLSPDRRNLLSWRLRXPPSSRGLNRCRSRWQVSHRHPNPCSR 195
R R RP R+ R RR+ R R P R R RSR + HR + R
Sbjct: 422 RTRDRRRPRRSNSRRRSRSRDRQRRSRSRDRRRYSPDRRERRRSRSRDRRRHRSRSTSRR 481
Query: 196 PGRSRAR 216
RS+ R
Sbjct: 482 RQRSKDR 488
>Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical
protein F25D7.4 protein.
Length = 932
Score = 28.3 bits (60), Expect = 5.7
Identities = 28/79 (35%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Frame = +3
Query: 3 RGCP-KAPRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAP 179
RG P KAP+ P A+ K AG + S + V+AP +T A P T A E S
Sbjct: 382 RGAPAKAPKAEPI-AQKKVAGKVQRAAPSKPASAVSAPKATAPASTSSAPAT-APEASRR 439
Query: 180 QP-----LLAPRSFPRPFN 221
P +L FP FN
Sbjct: 440 DPNDVTIVLDDSLFPEDFN 458
>Z70756-12|CAA94796.2| 180|Caenorhabditis elegans Hypothetical
protein T06E4.10 protein.
Length = 180
Score = 28.3 bits (60), Expect = 5.7
Identities = 22/64 (34%), Positives = 28/64 (43%)
Frame = +3
Query: 18 APRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQPLLAP 197
AP PA A P A + +P P AAP + A+A P P+ A AP AP
Sbjct: 59 APAYAPALAAPAYAPGLAAPAFAPAPVVAAAP-ALAPAYA-PAPVVAAAPAFAPAYAPAP 116
Query: 198 RSFP 209
+ P
Sbjct: 117 VASP 120
>Z31590-4|CAD27606.1| 495|Caenorhabditis elegans Hypothetical
protein R01H10.3d protein.
Length = 495
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = +3
Query: 18 APRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQPLLAP 197
AP + P NA A +K + + K A + + + A + P PS+ QP P
Sbjct: 382 APNRQPVNAAAAAAAAKP-KVQVAKKANILSTLAPTAAESVPTQSYSERPPSSQQPSPRP 440
Query: 198 RSFPRP 215
+ PRP
Sbjct: 441 SASPRP 446
>Z31590-3|CAD27605.1| 607|Caenorhabditis elegans Hypothetical
protein R01H10.3c protein.
Length = 607
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = +3
Query: 18 APRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQPLLAP 197
AP + P NA A +K + + K A + + + A + P PS+ QP P
Sbjct: 382 APNRQPVNAAAAAAAAKP-KVQVAKKANILSTLAPTAAESVPTQSYSERPPSSQQPSPRP 440
Query: 198 RSFPRP 215
+ PRP
Sbjct: 441 SASPRP 446
>Z31590-2|CAD27604.1| 538|Caenorhabditis elegans Hypothetical
protein R01H10.3b protein.
Length = 538
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = +3
Query: 18 APRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQPLLAP 197
AP + P NA A +K + + K A + + + A + P PS+ QP P
Sbjct: 382 APNRQPVNAAAAAAAAKP-KVQVAKKANILSTLAPTAAESVPTQSYSERPPSSQQPSPRP 440
Query: 198 RSFPRP 215
+ PRP
Sbjct: 441 SASPRP 446
>Z31590-1|CAA83461.1| 605|Caenorhabditis elegans Hypothetical
protein R01H10.3a protein.
Length = 605
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = +3
Query: 18 APRKCPANARPKTAGSKTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQPLLAP 197
AP + P NA A +K + + K A + + + A + P PS+ QP P
Sbjct: 382 APNRQPVNAAAAAAAAKP-KVQVAKKANILSTLAPTAAESVPTQSYSERPPSSQQPSPRP 440
Query: 198 RSFPRP 215
+ PRP
Sbjct: 441 SASPRP 446
>AL132898-2|CAC14413.1| 349|Caenorhabditis elegans Hypothetical
protein Y59A8B.3 protein.
Length = 349
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Frame = -2
Query: 293 TEHFNAMESNINKNWES-YKVVSLNVKRARERPGREQ-----GLGCRWLTCHR 153
T+HF+ + +NI N+ + + +VS V +P RE L C W CHR
Sbjct: 267 TKHFDQIANNIALNFIAIHGLVSSTVMLIAHKPYREAVGNIFRLRCTWERCHR 319
>Z49909-15|CAF31470.1| 697|Caenorhabditis elegans Hypothetical
protein C14A4.12b protein.
Length = 697
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 390 NTYFCFNERVYRICYSSVQSLSFLWVESPVFAGL 491
N Y F ++ Y+I ++S Q L FL +F GL
Sbjct: 381 NLYALFTKQFYKIFHTSEQKLPFLTAFLALFTGL 414
>Z49909-14|CAA90116.2| 717|Caenorhabditis elegans Hypothetical
protein C14A4.12a protein.
Length = 717
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 390 NTYFCFNERVYRICYSSVQSLSFLWVESPVFAGL 491
N Y F ++ Y+I ++S Q L FL +F GL
Sbjct: 401 NLYALFTKQFYKIFHTSEQKLPFLTAFLALFTGL 434
>U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical
protein T26C11.2 protein.
Length = 343
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +3
Query: 87 PKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQPLLAPRSFPRPF 218
PKP + P S F P P M P+P+ P+ P+PF
Sbjct: 18 PKPMPKSKPKSEPFPSPMPFPKPMPKPKPKPKPM--PKHKPKPF 59
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = +3
Query: 87 PKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQPLLAPRSFPRPFNV 224
PKP + P S F P P P+P P FP+P +
Sbjct: 90 PKPMPKSKPKSEPFPNPMPFPKPKPMPKHKPKPFPKPMLFPKPMPI 135
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +3
Query: 87 PKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQPLLAPRSFPRPF 218
PKP + P S F P P M P+P+ P+ P+PF
Sbjct: 154 PKPMPKSKPKSEPFPNPMPFPKPMPKPKPKPKPM--PKHKPKPF 195
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 27.9 bits (59), Expect = 7.5
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 10 APRPRGSARPTRAPKPPALRLLSPDRRNLLSWRLRXPPSSRGLNRCR-SRWQVSHRHPNP 186
+PR R + R+ PP R S DR+ S R R SSR + R SR + R P+P
Sbjct: 86 SPRRRSRSPRRRSRTPPRRRSRSRDRKR--SRRSRSRSSSRSRSPVRESRRRSESRSPSP 143
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 27.9 bits (59), Expect = 7.5
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 10 APRPRGSARPTRAPKPPALRLLSPDRRNLLSWRLRXPPSSRGLNRCR-SRWQVSHRHPNP 186
+PR R + R+ PP R S DR+ S R R SSR + R SR + R P+P
Sbjct: 86 SPRRRSRSPRRRSRTPPRRRSRSRDRKR--SRRSRSRSSSRSRSPVRESRRRSESRSPSP 143
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 27.9 bits (59), Expect = 7.5
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 10 APRPRGSARPTRAPKPPALRLLSPDRRNLLSWRLRXPPSSRGLNRCR-SRWQVSHRHPNP 186
+PR R + R+ PP R S DR+ S R R SSR + R SR + R P+P
Sbjct: 86 SPRRRSRSPRRRSRTPPRRRSRSRDRKR--SRRSRSRSSSRSRSPVRESRRRSESRSPSP 143
>AC084152-9|AAK39313.1| 296|Caenorhabditis elegans Hypothetical
protein Y102A11A.1 protein.
Length = 296
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 381 FIFNTYFCFNERVYRICYSSVQSLSFLW 464
F++N FC + +Y CY Q +S +W
Sbjct: 106 FVYN--FCATKLLYTSCYGGTQLVSLIW 131
>Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical
protein DY3.5 protein.
Length = 796
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +3
Query: 87 PKPAFVAAPXSTVFAWAKPLPLTMAGEPSAPQPLLAPRSFPRP 215
P+P P S P P T AP + P+S PRP
Sbjct: 602 PRPVQPVPPMSVATVTRGPPPPTRPASVIAPSSSVVPKSQPRP 644
>Z82096-7|CAB05033.2| 332|Caenorhabditis elegans Hypothetical
protein ZK909.5 protein.
Length = 332
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 97 AGFGDRDSKVLEPAVLG-RALAGHFRGALGHPR 2
A FG PA +G R LAGHF+ AL +P+
Sbjct: 100 ANFGPTMLLPQMPATIGVRELAGHFQDALHYPK 132
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/49 (40%), Positives = 23/49 (46%)
Frame = -3
Query: 223 TLNGRGNDRGASRGWGADGSPAIVSGSGLAHAKTVXSGAATKAGFGDRD 77
T GRG RG S G GS GSG A A SG+ G+G +D
Sbjct: 52 TGGGRGGGRGGSGGGRGGGSGGGRGGSGGAGAGGSGSGS---GGWGGQD 97
>U39674-6|AAA80416.1| 291|Caenorhabditis elegans Hypothetical
protein C06E2.1 protein.
Length = 291
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 136 LNRCRSRWQVSHRHPNPCSRPGRSRARLTFNETT 237
L++ + +W + HPNP S +TFN +T
Sbjct: 93 LSQFKGKWTLPEVHPNPALYKYESNTFITFNLST 126
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,963,803
Number of Sequences: 27780
Number of extensions: 305123
Number of successful extensions: 1353
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1319
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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