Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0280
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   6.5  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    21   8.6  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    21   8.6  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    21   8.6  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    21   8.6  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    21   8.6  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    21   8.6  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    21   8.6  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    21   8.6  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    21   8.6  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    21   8.6  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    21   8.6  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 66  KTFESRSPKPAFVAAPXSTVFAWAKPLPLTMAGEPS 173
           +T  S SP P   +AP S+  +         AG+PS
Sbjct: 506 ETNSSPSPNPRIASAPSSSTSSSPPAKGAAAAGQPS 541


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 214 GRGNDRGASRGWGAD 170
           GRG+ +G SRG G +
Sbjct: 83  GRGHGKGGSRGRGGN 97


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +3

Query: 390 NTYFCFNERVYRICYSSVQSLSFLWVESPVFAGLCP 497
           N Y  +N+  Y   Y ++  +  + +  PV+ G  P
Sbjct: 96  NNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGNFP 131


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +3

Query: 390 NTYFCFNERVYRICYSSVQSLSFLWVESPVFAGLCP 497
           N Y  +N+  Y   Y ++  +  + +  PV+ G  P
Sbjct: 96  NNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGNFP 131


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +3

Query: 390 NTYFCFNERVYRICYSSVQSLSFLWVESPVFAGLCP 497
           N Y  +N+  Y   Y ++  +  + +  PV+ G  P
Sbjct: 96  NNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGNFP 131


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +3

Query: 390 NTYFCFNERVYRICYSSVQSLSFLWVESPVFAGLCP 497
           N Y  +N+  Y   Y ++  +  + +  PV+ G  P
Sbjct: 96  NNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGNFP 131


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +3

Query: 390 NTYFCFNERVYRICYSSVQSLSFLWVESPVFAGLCP 497
           N Y  +N+  Y   Y ++  +  + +  PV+ G  P
Sbjct: 96  NNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGNFP 131


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +3

Query: 390 NTYFCFNERVYRICYSSVQSLSFLWVESPVFAGLCP 497
           N Y  +N+  Y   Y ++  +  + +  PV+ G  P
Sbjct: 96  NNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGNFP 131


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +3

Query: 390 NTYFCFNERVYRICYSSVQSLSFLWVESPVFAGLCP 497
           N Y  +N+  Y   Y ++  +  + +  PV+ G  P
Sbjct: 96  NNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGNFP 131


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +3

Query: 390 NTYFCFNERVYRICYSSVQSLSFLWVESPVFAGLCP 497
           N Y  +N+  Y   Y ++  +  + +  PV+ G  P
Sbjct: 96  NNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGNFP 131


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +3

Query: 390 NTYFCFNERVYRICYSSVQSLSFLWVESPVFAGLCP 497
           N Y  +N+  Y   Y ++  +  + +  PV+ G  P
Sbjct: 96  NNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGNFP 131


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +3

Query: 390 NTYFCFNERVYRICYSSVQSLSFLWVESPVFAGLCP 497
           N Y  +N+  Y   Y ++  +  + +  PV+ G  P
Sbjct: 329 NNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGNFP 364


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +3

Query: 390 NTYFCFNERVYRICYSSVQSLSFLWVESPVFAGLCP 497
           N Y  +N+  Y   Y ++  +  + +  PV+ G  P
Sbjct: 329 NNYNNYNKHNYNKLYYNINYIEQIPIPVPVYCGNFP 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,171
Number of Sequences: 438
Number of extensions: 4148
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)