Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0278
         (760 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    41   0.029
UniRef50_Q1HQD3 Cluster: 4-nitrophenylphosphatase; n=1; Bombyx m...    36   1.1  
UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    35   1.9  
UniRef50_Q6LFJ9 Cluster: Coatomer alpha subunit, putative; n=3; ...    35   1.9  
UniRef50_Q7ZTN4 Cluster: Vegf-B-prov protein; n=3; Xenopus|Rep: ...    33   7.7  

>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 41.1 bits (92), Expect = 0.029
 Identities = 17/23 (73%), Positives = 18/23 (78%)
 Frame = +2

Query: 311 MGDGNHSPSGGPYVRLPTKAIKK 379
           MGDGNHSPSG PY  LPT+A  K
Sbjct: 1   MGDGNHSPSGRPYASLPTRAKMK 23


>UniRef50_Q1HQD3 Cluster: 4-nitrophenylphosphatase; n=1; Bombyx
           mori|Rep: 4-nitrophenylphosphatase - Bombyx mori (Silk
           moth)
          Length = 296

 Score = 35.9 bits (79), Expect = 1.1
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = +2

Query: 2   SHTIRPDYYAASLGS 46
           SHTIRPDYYAASLGS
Sbjct: 276 SHTIRPDYYAASLGS 290


>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 35.1 bits (77), Expect = 1.9
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = +1

Query: 268  GRQRLGFAPSIAKVHGRR 321
            GRQRLG AP IA+VHGRR
Sbjct: 969  GRQRLGSAPGIAEVHGRR 986


>UniRef50_Q6LFJ9 Cluster: Coatomer alpha subunit, putative; n=3;
           Plasmodium|Rep: Coatomer alpha subunit, putative -
           Plasmodium falciparum (isolate 3D7)
          Length = 1537

 Score = 35.1 bits (77), Expect = 1.9
 Identities = 21/46 (45%), Positives = 27/46 (58%)
 Frame = -3

Query: 755 TTHYYVKSKTNLWEDMKKNNKTNHGIN*TLSSLILIYNAINATKSL 618
           TTH Y++ K+ +W D +KNN +N  I  TLS   L Y  IN  K L
Sbjct: 710 TTHEYIRIKSGIW-DERKNNNSNVFIYNTLSH--LKYILINGEKGL 752


>UniRef50_Q7ZTN4 Cluster: Vegf-B-prov protein; n=3; Xenopus|Rep:
           Vegf-B-prov protein - Xenopus laevis (African clawed
           frog)
          Length = 687

 Score = 33.1 bits (72), Expect = 7.7
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 138 ICICETKLNLEINRSVYLSTNQTSNVHS*YINYFNLFERYSGHR 269
           + ICE  LN  ++R++YL   Q+S +HS  ++  +     SG R
Sbjct: 199 LLICEATLNGIVHRTIYLPNKQSSKIHSVKLDAQDSIHLLSGER 242


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 687,572,415
Number of Sequences: 1657284
Number of extensions: 13596596
Number of successful extensions: 26915
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26909
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62969581935
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)