Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0278
         (760 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22206| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-38)                 29   3.1  
SB_23646| Best HMM Match : ASC (HMM E-Value=1.4e-12)                   29   4.1  
SB_34041| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_6260| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  

>SB_22206| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-38)
          Length = 362

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 424 YEVGVFFFAYRFSFCIVTY 480
           Y +G   FAY F+FC VTY
Sbjct: 103 YVIGYILFAYMFNFCGVTY 121


>SB_23646| Best HMM Match : ASC (HMM E-Value=1.4e-12)
          Length = 885

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = -3

Query: 668 LSSLILIYNAINATKSLALNKLSHRHHVHTIKINLKQTRVACDW--SMEGSRVDNLVSIF 495
           + S+ +  N I+ T    + +  +++H H    NL  T  +CD+     GSRV  L + F
Sbjct: 414 IPSVRVASNVIDVTSLRDICRRQNQNHKHLHITNLVHTSSSCDYFDGKRGSRVSELQAFF 473

Query: 494 L 492
           +
Sbjct: 474 V 474


>SB_34041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 951

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 510 LSLHISVTVAIRYNAKGKSICKKKYPDFISQGRWCH 403
           L+ ++S+++  RY      IC     D +SQGR+CH
Sbjct: 36  LTRYLSLSIG-RYRNMLLPICALNTLDLVSQGRYCH 70


>SB_6260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 600

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
 Frame = -2

Query: 474 YNAKGKSICKKKYPDFISQGRWCH*LYLQVPSFFIAFVGRRT-----YGPPDGEWLP 319
           YN KGK   KK    FI  G W     L +P F   +          Y PPD  WLP
Sbjct: 195 YNDKGKMSIKKLRYIFI--GVWLGAAVLNLPLFLTIYYEASKHFCFEYWPPDLPWLP 249


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,412,199
Number of Sequences: 59808
Number of extensions: 428420
Number of successful extensions: 766
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)