Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0278
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71264-1|CAA95828.1|  998|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U50193-8|AAL11478.2|  394|Caenorhabditis elegans Hypothetical pr...    29   4.7  

>Z71264-1|CAA95828.1|  998|Caenorhabditis elegans Hypothetical
           protein K07G5.1 protein.
          Length = 998

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/91 (23%), Positives = 39/91 (42%)
 Frame = -3

Query: 710 MKKNNKTNHGIN*TLSSLILIYNAINATKSLALNKLSHRHHVHTIKINLKQTRVACDWSM 531
           +KKNNK  H IN  L  ++ +Y+     + L L+      ++  +   L  T       +
Sbjct: 526 LKKNNKQVHVINKVLLDVVKLYSEEGCLEELNLSDCRLGAYLSVLINTLAATTTLKSLDI 585

Query: 530 EGSRVDNLVSIFLSQ*LYVTMQKENLYAKKN 438
            G+ + N  +  LS+ L V +   ++    N
Sbjct: 586 SGNEMGNFGARILSKALQVNVSLRSVSIDNN 616


>U50193-8|AAL11478.2|  394|Caenorhabditis elegans Hypothetical
           protein ZK328.6 protein.
          Length = 394

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
 Frame = -3

Query: 638 INATKSL-ALNKLSHRHHVHTIKINLKQTRVACDWSMEGSRVDNLVSIFLSQ*LY---VT 471
           ++A KS+  LN++S+   +   KI L    +  D+     R+D L ++   Q +    +T
Sbjct: 195 LHAEKSMHILNQISNLPSLPLYKIKL----ICTDFDQPQLRLDQLYAVMREQNIQAKNIT 250

Query: 470 MQKENLYAKKNTPTSY 423
           M+  +L+A   TP SY
Sbjct: 251 MRDWSLFADGTTPVSY 266


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,184,054
Number of Sequences: 27780
Number of extensions: 336349
Number of successful extensions: 735
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)