Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0278
         (760 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli...    30   1.5  
At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein heli...    29   4.4  

>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
           helicase, putative 
          Length = 2172

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 393 LQVPSFFIAFVGRRTYGPPDGEWLP-SPMDFSNARGKAKPLPTYD 262
           + +P+  +   G + Y P  GEW+  SP+D     G+A   P YD
Sbjct: 844 VNLPAHTVIIKGTQVYNPERGEWMELSPLDVMQMIGRA-GRPQYD 887


>At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein
           helicase, putative similar to SP|O75643 U5 small nuclear
           ribonucleoprotein 200 kDa helicase {Homo sapiens};
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain, PF02889:
           Sec63 domain
          Length = 2171

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -2

Query: 393 LQVPSFFIAFVGRRTYGPPDGEWLP-SPMDFSNARGKAKPLPTYD 262
           + +P+  +   G + Y P  G W+  SP+D     G+A   P YD
Sbjct: 843 VNLPAHTVIIKGTQVYNPEKGAWMELSPLDVMQMLGRA-GRPQYD 886


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,927,135
Number of Sequences: 28952
Number of extensions: 302521
Number of successful extensions: 575
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)