Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0277
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    29   0.048
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   3.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.5  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   7.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   9.5  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   9.5  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 29.1 bits (62), Expect = 0.048
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 245 WCSPPPRHRGAGRGH-QVEGPSGHHRAHAST 334
           + +P P H   G GH  +     HH +HA+T
Sbjct: 409 YSTPGPHHHTMGHGHSHIHATPHHHHSHAAT 439


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 28  PQIKDLVCDANQHVKSALASVIMGLSPIVG 117
           PQ+ D+   +N  +  AL +  +  SP++G
Sbjct: 24  PQLTDVCSASNGELFLALLNFFVATSPVIG 53


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 287 HQVEGPSGHHRAHA 328
           H V  PSGHH + A
Sbjct: 511 HHVAPPSGHHASSA 524


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 69  QVCTSLRHHGPEPHSGQTE 125
           Q CT +  +G E HSG  E
Sbjct: 119 QECTFISVNGKEVHSGNIE 137


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
 Frame = -3

Query: 227 TSFTHSRLEIMLSRTSGHSSFSC-VRNSGRRCSIVFCLPTMGLRPMMTEASADLTCWLAS 51
           T F H R    +   +    F   +  S +R   V   P +       +A +DL     S
Sbjct: 170 TGFEHKRQPTSIDLNAVRLCFQVFLEGSQKRKFNVPLQPVVSDPIFDKKAMSDLVICKLS 229

Query: 50  HTKSLICGKIMVMMMC 3
           H+ + + G + ++++C
Sbjct: 230 HSNASVAGGMEMILLC 245


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
 Frame = -3

Query: 227 TSFTHSRLEIMLSRTSGHSSFSC-VRNSGRRCSIVFCLPTMGLRPMMTEASADLTCWLAS 51
           T F H R    +   +    F   +  S +R   V   P +       +A +DL     S
Sbjct: 170 TGFEHKRQPTSIDLNAVRLCFQVFLEGSQKRKFNVPLQPVVSDPIFDKKAMSDLVICKLS 229

Query: 50  HTKSLICGKIMVMMMC 3
           H+ + + G + ++++C
Sbjct: 230 HSNASVAGGMEMILLC 245


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +1

Query: 292 SGGSVWPSSSTCLYWRDSWARSSS 363
           SG  +W    +C+  ++S  R +S
Sbjct: 64  SGSKIWQMERSCMCCQESGEREAS 87


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,384
Number of Sequences: 438
Number of extensions: 5053
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)