Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0277
(769 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g13320.1 68414.m01546 serine/threonine protein phosphatase 2A... 142 2e-34
At3g25800.1 68416.m03211 serine/threonine protein phosphatase 2A... 139 2e-33
At1g25490.1 68414.m03165 serine/threonine protein phosphatase 2A... 137 7e-33
At1g03340.1 68414.m00313 expressed protein similar to hypothetic... 31 0.64
At5g01400.1 68418.m00053 expressed protein contains low similari... 31 0.85
At4g29380.1 68417.m04197 protein kinase family protein / WD-40 r... 30 1.5
At1g36940.1 68414.m04604 hypothetical protein 29 2.6
At1g33340.1 68414.m04125 epsin N-terminal homology (ENTH) domain... 29 4.5
At4g37890.2 68417.m05359 zinc finger (C3HC4-type RING finger) fa... 28 6.0
At4g37890.1 68417.m05358 zinc finger (C3HC4-type RING finger) fa... 28 6.0
At3g29150.1 68416.m03649 expressed protein 28 6.0
At3g26050.1 68416.m03244 expressed protein 28 6.0
At1g26150.1 68414.m03192 protein kinase family protein similar t... 28 6.0
At4g34430.4 68417.m04893 DNA-binding family protein contains Pfa... 28 7.9
At4g34430.3 68417.m04892 DNA-binding family protein contains Pfa... 28 7.9
At4g34430.2 68417.m04891 DNA-binding family protein contains Pfa... 28 7.9
At4g34430.1 68417.m04890 DNA-binding family protein contains Pfa... 28 7.9
At1g61710.1 68414.m06960 DC1 domain-containing protein contains ... 28 7.9
At1g12930.1 68414.m01501 importin-related similar to late gestat... 28 7.9
>At1g13320.1 68414.m01546 serine/threonine protein phosphatase 2A
(PP2A) 65 kDa regulatory subunit, putative similar to
protein phosphatase 2A 65 kDa regulatory subunit
GI:683502 from [Arabidopsis thaliana]
Length = 587
Score = 142 bits (344), Expect = 2e-34
Identities = 78/168 (46%), Positives = 105/168 (62%), Gaps = 23/168 (13%)
Frame = +3
Query: 255 LLPAIVELAEDTKWRVRLAIIEHMPLLAGQLGQEFFDEKLTSLCMSWLVDHVYAIREAAT 434
LLPAIVELAED WRVRLAIIE++PLLA QLG FFDEKL +LCM WL D V++IREAA
Sbjct: 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDEKLGALCMQWLQDKVHSIREAAA 457
Query: 435 LNLKKLVEQYGPQWVL---------------VLH*RAVRRC--------GKDITTRVLLP 545
NLK+L E++GP+W + L+ + R G +IT LLP
Sbjct: 458 NNLKRLAEEFGPEWAMQHIVPQVLEMINNPHYLYRMTILRAVSLLAPVMGSEITCSKLLP 517
Query: 546 TVLSMADDNVANVRFNVAKTLQIMAKYLDPAVIQPQVKPVLEKLNVGP 689
V++ + D V N++FNVAK +Q + +D AV++ ++P L +L+ P
Sbjct: 518 AVITASKDRVPNIKFNVAKMMQSLIPIVDQAVVENMIRPCLVELSEDP 565
Score = 104 bits (250), Expect = 6e-23
Identities = 49/75 (65%), Positives = 64/75 (85%)
Frame = +1
Query: 22 ILPQIKDLVCDANQHVKSALASVIMGLSPIVGRQNTIEHLLPLFLTQLKDECPEVRLNII 201
ILP +K+L D++QHV+SALASVIMG++P++G+ TIEHLLP+FL+ LKDE P+VRLNII
Sbjct: 320 ILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLLPIFLSLLKDEFPDVRLNII 379
Query: 202 SNLECVNEVIGIQQL 246
S L+ VN+VIGI L
Sbjct: 380 SKLDQVNQVIGIDLL 394
Score = 41.5 bits (93), Expect = 6e-04
Identities = 16/73 (21%), Positives = 39/73 (53%)
Frame = +1
Query: 13 MTMILPQIKDLVCDANQHVKSALASVIMGLSPIVGRQNTIEHLLPLFLTQLKDECPEVRL 192
M I+PQ+ +++ + + + + + L+P++G + T LLP +T KD P ++
Sbjct: 473 MQHIVPQVLEMINNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPAVITASKDRVPNIKF 532
Query: 193 NIISNLECVNEVI 231
N+ ++ + ++
Sbjct: 533 NVAKMMQSLIPIV 545
Score = 36.3 bits (80), Expect = 0.022
Identities = 40/166 (24%), Positives = 64/166 (38%), Gaps = 23/166 (13%)
Frame = +3
Query: 249 AVLLPAIVELAEDTKWRVRLAIIEHMPLLAGQLGQEFFDEKLTSLCMSWLVDHVYAIREA 428
A +LP IV ++D WRVR + + L +G E L L D+ +R A
Sbjct: 240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYARLLCDNEAEVRIA 299
Query: 429 ATLNLKKLVEQYGPQWVL--VL------------H*RAVRR---------CGKDITTRVL 539
A + K P+ + +L H R+ GKD T L
Sbjct: 300 AAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHL 359
Query: 540 LPTVLSMADDNVANVRFNVAKTLQIMAKYLDPAVIQPQVKPVLEKL 677
LP LS+ D +VR N+ L + + + ++ + P + +L
Sbjct: 360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 405
Score = 31.5 bits (68), Expect = 0.64
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = +1
Query: 16 TMILPQIKDLVCDANQHVKSALASVIMGLSPIVGRQNTIEHLLPLFLTQLKDECPEVRLN 195
T ++P L+CD V+ A A + I+ + I+H+LP D VR
Sbjct: 279 TDLVPAYARLLCDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSA 338
Query: 196 IISNLECVNEVIG 234
+ S + + V+G
Sbjct: 339 LASVIMGMAPVLG 351
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +1
Query: 685 DPDVDVKYFASEAIAGI 735
DPDVDV+YFA++A+ I
Sbjct: 564 DPDVDVRYFANQALQSI 580
>At3g25800.1 68416.m03211 serine/threonine protein phosphatase 2A
(PP2A) 65 KDa regulatory subunit A identical to protein
phosphatase 2A 65 kDa regulatory subunit (pDF1)
GI:683502 from [Arabidopsis thaliana]
Length = 587
Score = 139 bits (336), Expect = 2e-33
Identities = 76/168 (45%), Positives = 105/168 (62%), Gaps = 23/168 (13%)
Frame = +3
Query: 255 LLPAIVELAEDTKWRVRLAIIEHMPLLAGQLGQEFFDEKLTSLCMSWLVDHVYAIREAAT 434
LLPAIVELAED WRVRLAIIE++PLLA QLG FFD+KL +LCM WL D V++IR+AA
Sbjct: 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVHSIRDAAA 457
Query: 435 LNLKKLVEQYGPQWVL---------------VLH*RAVRRC--------GKDITTRVLLP 545
NLK+L E++GP+W + L+ + R G +IT LLP
Sbjct: 458 NNLKRLAEEFGPEWAMQHIVPQVLEMVNNPHYLYRMTILRAVSLLAPVMGSEITCSKLLP 517
Query: 546 TVLSMADDNVANVRFNVAKTLQIMAKYLDPAVIQPQVKPVLEKLNVGP 689
V++ + D V N++FNVAK LQ + +D +V++ ++P L +L+ P
Sbjct: 518 VVMTASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKTIRPGLVELSEDP 565
Score = 105 bits (251), Expect = 4e-23
Identities = 50/80 (62%), Positives = 66/80 (82%)
Frame = +1
Query: 7 IIMTMILPQIKDLVCDANQHVKSALASVIMGLSPIVGRQNTIEHLLPLFLTQLKDECPEV 186
I + ILP +K+L D++QHV+SALASVIMG++P++G+ TIEHLLP+FL+ LKDE P+V
Sbjct: 315 IAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLLPIFLSLLKDEFPDV 374
Query: 187 RLNIISNLECVNEVIGIQQL 246
RLNIIS L+ VN+VIGI L
Sbjct: 375 RLNIISKLDQVNQVIGIDLL 394
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/73 (24%), Positives = 40/73 (54%)
Frame = +1
Query: 13 MTMILPQIKDLVCDANQHVKSALASVIMGLSPIVGRQNTIEHLLPLFLTQLKDECPEVRL 192
M I+PQ+ ++V + + + + + L+P++G + T LLP+ +T KD P ++
Sbjct: 473 MQHIVPQVLEMVNNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNIKF 532
Query: 193 NIISNLECVNEVI 231
N+ L+ + ++
Sbjct: 533 NVAKVLQSLIPIV 545
Score = 36.3 bits (80), Expect = 0.022
Identities = 39/164 (23%), Positives = 65/164 (39%), Gaps = 23/164 (14%)
Frame = +3
Query: 255 LLPAIVELAEDTKWRVRLAIIEHMPLLAGQLGQEFFDEKLTSLCMSWLVDHVYAIREAAT 434
+LP IV ++D WRVR + + L +G E +L + L D+ +R AA
Sbjct: 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAAA 301
Query: 435 LNLKKLVEQYGPQWVL--VL------------H*RAVRR---------CGKDITTRVLLP 545
+ K P+ + +L H R+ GKD T LLP
Sbjct: 302 GKVTKFCRILNPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLLP 361
Query: 546 TVLSMADDNVANVRFNVAKTLQIMAKYLDPAVIQPQVKPVLEKL 677
LS+ D +VR N+ L + + + ++ + P + +L
Sbjct: 362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 405
Score = 31.1 bits (67), Expect = 0.85
Identities = 16/75 (21%), Positives = 35/75 (46%)
Frame = +1
Query: 10 IMTMILPQIKDLVCDANQHVKSALASVIMGLSPIVGRQNTIEHLLPLFLTQLKDECPEVR 189
+ T ++ +DL D V+ L ++ Q+ ++H+LP+ + +D+ VR
Sbjct: 199 LKTDVMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQHILPVIVNFSQDKSWRVR 258
Query: 190 LNIISNLECVNEVIG 234
+ + L + E +G
Sbjct: 259 YMVANQLYELCEAVG 273
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +1
Query: 22 ILPQIKDLVCDANQHVKSALASVIMGLSPIVGRQNTIEHLLPLFLTQLKDECPEVRL 192
ILP I + D + V+ +A+ + L VG + T L+P ++ L+D EVR+
Sbjct: 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRI 298
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 685 DPDVDVKYFASEAIAGI 735
DPDVDV++FA++A+ I
Sbjct: 564 DPDVDVRFFANQALQSI 580
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = +3
Query: 513 GKDITTRVLLPTVLSMADDNVANVRFNVAKTLQIMAKYLDPAVIQPQVKPVLEKLN 680
G + T L+P + + DN A VR A + + L+P + + P +++L+
Sbjct: 273 GPEPTRTELVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEIAIQHILPCVKELS 328
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +1
Query: 7 IIMTMILPQIKDLVCDANQHVKSALASVIMGLSPIVGRQNTIEHLLPLFLTQLKDECPEV 186
I + +LP + D ++K +A V+ L PIV Q+ +E + L +L ++ P+V
Sbjct: 510 ITCSKLLPVVMTASKDRVPNIKFNVAKVLQSLIPIVD-QSVVEKTIRPGLVELSED-PDV 567
Query: 187 RLNIISN--LECVNEVI 231
+ +N L+ ++ V+
Sbjct: 568 DVRFFANQALQSIDNVM 584
>At1g25490.1 68414.m03165 serine/threonine protein phosphatase 2A
(PP2A) regulatory subunit A (RCN1) identical to
phosphoprotein phosphatase 2A, regulatory subunit A
GI:1262171 from [Arabidopsis thaliana]
Length = 588
Score = 137 bits (332), Expect = 7e-33
Identities = 78/168 (46%), Positives = 100/168 (59%), Gaps = 23/168 (13%)
Frame = +3
Query: 255 LLPAIVELAEDTKWRVRLAIIEHMPLLAGQLGQEFFDEKLTSLCMSWLVDHVYAIREAAT 434
LLPAIVELAED WRVRLAIIE++PLLA QLG FFD+KL +LCM WL D VY+IREAA
Sbjct: 398 LLPAIVELAEDRHWRVRLAIIEYVPLLASQLGIGFFDDKLGALCMQWLQDKVYSIREAAA 457
Query: 435 LNLKKLVEQYGPQWVL---------------VLH*RAVRRC--------GKDITTRVLLP 545
NLK+L E++GP+W + LH V R G +IT LP
Sbjct: 458 NNLKRLAEEFGPEWAMQHLVPQVLDMVNNPHYLHRMMVLRAISLMAPVMGSEITCSKFLP 517
Query: 546 TVLSMADDNVANVRFNVAKTLQIMAKYLDPAVIQPQVKPVLEKLNVGP 689
V+ + D V N++FNVAK LQ + +D +V+ ++ L L+ P
Sbjct: 518 VVVEASKDRVPNIKFNVAKLLQSLIPIVDQSVVDKTIRQCLVDLSEDP 565
Score = 106 bits (254), Expect = 2e-23
Identities = 50/75 (66%), Positives = 65/75 (86%)
Frame = +1
Query: 22 ILPQIKDLVCDANQHVKSALASVIMGLSPIVGRQNTIEHLLPLFLTQLKDECPEVRLNII 201
ILP +K+L D++QHV+SALASVIMG++PI+G+ +TIEHLLP+FL+ LKDE P+VRLNII
Sbjct: 320 ILPCVKELSSDSSQHVRSALASVIMGMAPILGKDSTIEHLLPIFLSLLKDEFPDVRLNII 379
Query: 202 SNLECVNEVIGIQQL 246
S L+ VN+VIGI L
Sbjct: 380 SKLDQVNQVIGIDLL 394
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/73 (21%), Positives = 38/73 (52%)
Frame = +1
Query: 13 MTMILPQIKDLVCDANQHVKSALASVIMGLSPIVGRQNTIEHLLPLFLTQLKDECPEVRL 192
M ++PQ+ D+V + + + + I ++P++G + T LP+ + KD P ++
Sbjct: 473 MQHLVPQVLDMVNNPHYLHRMMVLRAISLMAPVMGSEITCSKFLPVVVEASKDRVPNIKF 532
Query: 193 NIISNLECVNEVI 231
N+ L+ + ++
Sbjct: 533 NVAKLLQSLIPIV 545
Score = 35.9 bits (79), Expect = 0.030
Identities = 39/166 (23%), Positives = 65/166 (39%), Gaps = 23/166 (13%)
Frame = +3
Query: 249 AVLLPAIVELAEDTKWRVRLAIIEHMPLLAGQLGQEFFDEKLTSLCMSWLVDHVYAIREA 428
A +LP IV ++D WRVR + + L +G + L + L D+ +R A
Sbjct: 240 ARILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPDCTRTDLVPAYVRLLRDNEAEVRIA 299
Query: 429 ATLNLKKLVEQYGPQWVL--VL------------H*RAVRR---------CGKDITTRVL 539
A + K P+ + +L H R+ GKD T L
Sbjct: 300 AAGKVTKFCRLLNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPILGKDSTIEHL 359
Query: 540 LPTVLSMADDNVANVRFNVAKTLQIMAKYLDPAVIQPQVKPVLEKL 677
LP LS+ D +VR N+ L + + + ++ + P + +L
Sbjct: 360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 405
Score = 31.1 bits (67), Expect = 0.85
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +1
Query: 685 DPDVDVKYFASEAIAGIAG 741
DPDVDV+YFA++A+ I G
Sbjct: 564 DPDVDVRYFANQALNSIDG 582
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 22 ILPQIKDLVCDANQHVKSALASVIMGLSPIVGRQNTIEHLLPLFLTQLKDECPEVRL 192
ILP I + D + V+ +A+ + L VG T L+P ++ L+D EVR+
Sbjct: 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPDCTRTDLVPAYVRLLRDNEAEVRI 298
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +3
Query: 513 GKDITTRVLLPTVLSMADDNVANVRFNVAKTLQIMAKYLDPAVIQPQVKPVLEKLN 680
G D T L+P + + DN A VR A + + L+P + + P +++L+
Sbjct: 273 GPDCTRTDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRLLNPELAIQHILPCVKELS 328
>At1g03340.1 68414.m00313 expressed protein similar to hypothetical
protein GB:AAC79114
Length = 385
Score = 31.5 bits (68), Expect = 0.64
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -1
Query: 490 CRTSTHCGPYCSTSFFRLRVAASRMAYTWSTSHDMHKLVSFSSK 359
C ++ P+C+ FF ++ S + +WS S LV+F+ K
Sbjct: 308 CNVASRQVPFCANQFFEGAMSLSLVLLSWSVSRLREALVNFNRK 351
>At5g01400.1 68418.m00053 expressed protein contains low similarity
to symplekin SP:Q92797 from [Homo sapiens]
Length = 1467
Score = 31.1 bits (67), Expect = 0.85
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +1
Query: 1 EHIIMTMILPQIKDLVCDANQHVKSALASVI--MGLSPIVGRQNTIEHLLPLFLTQLKDE 174
+ + T +LP + DL+ D V+ +A ++ +GL + I ++PL + L+DE
Sbjct: 40 DSVFPTELLPHLFDLLSDQFGAVRKFVAEILGEIGLKYV----ELIPEIVPLLIKSLEDE 95
Query: 175 CPEVRLNIIS 204
P V +I+
Sbjct: 96 TPAVARQVIA 105
>At4g29380.1 68417.m04197 protein kinase family protein / WD-40
repeat family protein contains Pfam PF00400: WD domain,
G-beta repeat; contains Pfam PF00069: Protein kinase
domain; contains PF02985: HEAT repeat; similar to
adaptor protein (GI:1817584) [Homo sapiens]; similar to
VPS15 protein (GI:6103009) [Pichia pastoris]
Length = 1494
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/67 (26%), Positives = 36/67 (53%)
Frame = +1
Query: 22 ILPQIKDLVCDANQHVKSALASVIMGLSPIVGRQNTIEHLLPLFLTQLKDECPEVRLNII 201
+LP + + D ++ ++S I+ + VG+++ E+LLP L D+ V I+
Sbjct: 653 LLPILPAFLNDRDEQLRSVFFEKIVYVCFFVGQRSVEEYLLPYIDQALSDQTEAV---IV 709
Query: 202 SNLECVN 222
+ LEC++
Sbjct: 710 NALECLS 716
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -1
Query: 397 SHDMHKLVSFSSKNSWPSCPASRGMCSMMARRTLHLVSSAS 275
S + K +SF S+ ++ SRGMC+ M R + +V AS
Sbjct: 1110 SRKLEKDISFRSRLTY-HLEGSRGMCTTMLRNSTQVVVGAS 1149
>At1g36940.1 68414.m04604 hypothetical protein
Length = 181
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 323 VLDDGQTDPPLGVLCQLHDGGEED 252
V+D + DPPL V+ + HDGG D
Sbjct: 124 VIDVAELDPPLPVVKKTHDGGAGD 147
>At1g33340.1 68414.m04125 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related contains Pfam PF01417: ENTH domain. ENTH
(Epsin N-terminal homology) domain; similar to clathrin
assembly protein AP180 (GI:6492344) [Xenopus laevis]
Length = 374
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 464 VLLHQLLQVEGRSLADGVHVVHQPRHAQAG 375
+L H+LL+ RS+ +H+ H H Q G
Sbjct: 97 LLFHRLLRGSSRSIEQQLHIAHTSGHLQIG 126
>At4g37890.2 68417.m05359 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 711
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 399 PATTCTSWSASRRRTPGPAVP 337
P C SWSA+ TP P++P
Sbjct: 59 PTIPCQSWSATAISTPSPSLP 79
>At4g37890.1 68417.m05358 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 739
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 399 PATTCTSWSASRRRTPGPAVP 337
P C SWSA+ TP P++P
Sbjct: 59 PTIPCQSWSATAISTPSPSLP 79
>At3g29150.1 68416.m03649 expressed protein
Length = 417
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/89 (20%), Positives = 34/89 (38%)
Frame = -1
Query: 463 YCSTSFFRLRVAASRMAYTWSTSHDMHKLVSFSSKNSWPSCPASRGMCSMMARRTLHLVS 284
Y S S F + AS + +W + + + +P +SRG +++
Sbjct: 55 YSSLSEFEANIQASAVCKSWCEAAASVRKLQPRPWLLYPLKRSSRGFTDPNTPCETYILF 114
Query: 283 SASSTMAGRRTAPAVGCRSLHSHTRGWRL 197
+ ++ P +GC S+ GW L
Sbjct: 115 DPLRNQSYKQEFPGLGCHKFLSYKNGWLL 143
>At3g26050.1 68416.m03244 expressed protein
Length = 533
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 349 PSCPASRGMCSMMARRTLHLVSSASSTMAGR-RTAPAVGCRSLHSHTR 209
P P + S R+ + + SS S ++ + P+VGC +L +H+R
Sbjct: 342 PRLPLLSNLLSENKRKNISVRSSVSCRISNNEQRKPSVGCENLSTHSR 389
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/48 (39%), Positives = 20/48 (41%)
Frame = -2
Query: 411 TRGPPATTCTSWSASRRRTPGPAVPPVEACAR*WPDGPSTWCPLPAPR 268
T PP T TS S P P PP PD PS PLP P+
Sbjct: 130 TEAPPTTPITSPSPPTNPPPPPESPPSLPA----PDPPSN--PLPPPK 171
>At4g34430.4 68417.m04893 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 986
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -2
Query: 306 DGPSTWCPLPAPRWRGGGLHQLLDA 232
D P++ P+PAPR RGGGL + +A
Sbjct: 20 DSPASE-PMPAPRRRGGGLKRKANA 43
>At4g34430.3 68417.m04892 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 983
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -2
Query: 306 DGPSTWCPLPAPRWRGGGLHQLLDA 232
D P++ P+PAPR RGGGL + +A
Sbjct: 20 DSPASE-PMPAPRRRGGGLKRKANA 43
>At4g34430.2 68417.m04891 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 985
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -2
Query: 306 DGPSTWCPLPAPRWRGGGLHQLLDA 232
D P++ P+PAPR RGGGL + +A
Sbjct: 20 DSPASE-PMPAPRRRGGGLKRKANA 43
>At4g34430.1 68417.m04890 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 985
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -2
Query: 306 DGPSTWCPLPAPRWRGGGLHQLLDA 232
D P++ P+PAPR RGGGL + +A
Sbjct: 20 DSPASE-PMPAPRRRGGGLKRKANA 43
>At1g61710.1 68414.m06960 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 402
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = -3
Query: 251 CTSCWMPITSFTHSRLEIMLSRTSGHSSFSCVRNSGRRCSIVFCL 117
C +C++PI +L + +T H+ +C+ +C + C+
Sbjct: 272 CQACYLPIFEGRDGKLICRVCKTERHNQLNCI-----KCDFIVCM 311
>At1g12930.1 68414.m01501 importin-related similar to late gestation
lung 2 protein (GI:7274209) {Rattus norvegicus}; similar
to Ran binding protein 13 (importin 13)) (GI:8133102)
{Homo sapiens}; contains weak hit to Pfam PF03810:
Importin-beta N-terminal domain
Length = 1005
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = -2
Query: 168 LQLCEEQRQEMFNSVLSAHYGAQAHDDGG*CRLDVLVGITHQVLDLWQDHGHDDV 4
L L + + F+ ++ A QAHDDG L++L + ++ D H D+
Sbjct: 113 LLLHSDPYSKPFDKLMFALQNLQAHDDGNVVLLELLTVLPEEISDTRHFSHHSDL 167
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,559,867
Number of Sequences: 28952
Number of extensions: 392550
Number of successful extensions: 1264
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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