Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0273
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    38   0.002
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo...    29   0.95 
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce...    26   6.7  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    25   8.9  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   8.9  

>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +2

Query: 506 GDWICKCGLYNFKRRQVCYRRTCN 577
           GDW+C+CG  NF+RR  C R  CN
Sbjct: 562 GDWLCECGFTNFRRRSNCLR--CN 583



 Score = 31.1 bits (67), Expect = 0.18
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +2

Query: 506 GDWICK-CGLYNFKRRQVCYR 565
           GDW C  CG  NF+RR  C+R
Sbjct: 345 GDWNCPMCGFSNFQRRTSCFR 365


>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
           Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 672 LDALTTEENILEELKLRCSKEVL 740
           L +L ++E++LE LKLRCS   L
Sbjct: 65  LQSLASQESLLEILKLRCSSSTL 87


>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 75  DTREVTRNYVTAGKRYDVLAKSRGALLEVGHQQMGTP 185
           D R V+RN++T  K+Y   AK+     + G+++ G+P
Sbjct: 314 DERRVSRNFITLMKQY---AKTPNPKGDGGYKKAGSP 347


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 471 CPFLFPYQTCPSHDYRIDY*TVSSFCH 391
           CP ++ Y     H  RID   V  FC+
Sbjct: 164 CPLIWRYYVEKEHPVRIDVSEVRKFCY 190


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = -1

Query: 634 RLHRYDPHHLHKYTLRSF--PITSSTVTDLTSFKVV*TTLADPIPGDAL 494
           + HR  P HLH+Y  RS    +TS     + S K +       IPG  +
Sbjct: 806 KFHRPFPRHLHRYVGRSASESLTSEKDESIKSMKGIDDFANLEIPGKGI 854


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,524,578
Number of Sequences: 5004
Number of extensions: 44088
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)