Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0273
(760 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0778 - 5799260-5799273,5799377-5799447,5800163-5800578 36 0.035
04_01_0060 - 607615-607706,608497-608531,609283-609360,610402-61... 35 0.081
07_03_0436 - 18188221-18188373,18189121-18189233,18189817-181898... 33 0.19
06_01_0297 - 2162632-2162651,2162718-2162788,2162962-2163314 33 0.19
06_03_1336 - 29424470-29424897,29425243-29429653 31 1.3
03_05_0868 + 28385066-28385478,28386050-28386167,28386365-283867... 31 1.3
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 30 1.7
09_04_0430 + 17502387-17503505 29 3.0
02_01_0500 - 3623837-3624019,3624591-3624778,3625209-3626147,362... 29 4.0
11_01_0404 + 3071412-3071464,3073572-3074970 28 7.0
10_08_0614 - 19238064-19238132,19238381-19238407,19238436-192385... 28 7.0
10_08_0373 - 17286104-17288839 28 9.3
08_02_1473 - 27358162-27358275,27358968-27359024,27359102-273592... 28 9.3
>02_01_0778 - 5799260-5799273,5799377-5799447,5800163-5800578
Length = 166
Score = 35.9 bits (79), Expect = 0.035
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 455 GNRKGQAPG*GAEQRITGDWICKCGLYNFKRRQVCYR 565
G+ G G G++ R GDW C CG +NF R C++
Sbjct: 52 GSSFGGGFGTGSDVR-PGDWYCNCGAHNFASRSSCFK 87
>04_01_0060 -
607615-607706,608497-608531,609283-609360,610402-610550,
610639-610730,611202-611280,611774-612150,613016-613226
Length = 370
Score = 34.7 bits (76), Expect = 0.081
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +2
Query: 503 TGDWICKCGLYNFKRRQVCYRRTCNGKRSEGVFMEVMGIV------TV*SKHLASQEV 658
+GDW+C CG +N+ R C + C+ G+ M T+ +K LAS+E+
Sbjct: 179 SGDWLCSCGFHNYSSRTQC--KQCSAPVPSGIPSTTMKTTVPDTSSTLGTKRLASEEL 234
>07_03_0436 -
18188221-18188373,18189121-18189233,18189817-18189889,
18189979-18190046,18190132-18190372,18191614-18191732,
18192977-18193028,18193178-18193192
Length = 277
Score = 33.5 bits (73), Expect = 0.19
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2
Query: 506 GDWIC-KCGLYNFKRRQVCYRRTCNGKR 586
GDW C +CG NF R VC R C R
Sbjct: 28 GDWTCPQCGNVNFSFRNVCNRGACGAPR 55
>06_01_0297 - 2162632-2162651,2162718-2162788,2162962-2163314
Length = 147
Score = 33.5 bits (73), Expect = 0.19
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 506 GDWICKCGLYNFKRRQVCYR 565
GDW C CG +NF R C++
Sbjct: 56 GDWYCNCGYHNFASRASCFK 75
Score = 31.9 bits (69), Expect = 0.57
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = +2
Query: 506 GDWICK---CGLYNFKRRQVCYRRTCNGKR 586
GDWIC C ++NF R CYR CN R
Sbjct: 112 GDWICTRPGCNVHNFASRIECYR--CNAPR 139
>06_03_1336 - 29424470-29424897,29425243-29429653
Length = 1612
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +3
Query: 612 WGS*RCSRNTWHHKRLLFRRLDALTTEENILEELKLRCSK 731
WGS R +T +L F R+D T ++I E+LKL C+K
Sbjct: 188 WGSQR--EDTMKTPKLKFDRVDLSTRTKHISEQLKLVCAK 225
>03_05_0868 +
28385066-28385478,28386050-28386167,28386365-28386726,
28389308-28389406,28389485-28389890
Length = 465
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = +2
Query: 506 GDWIC-KCGLYNFKRRQVCYR 565
GDW+C KC NF R ++C++
Sbjct: 292 GDWLCPKCHFMNFARNKMCFK 312
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 494 QRITGDWIC-KCGLYNFKRRQVCYRRTCNGKRSE 592
Q I G+W C C NF+R +VC + G ++
Sbjct: 321 QLIPGEWECPSCSFVNFRRNKVCLKCKHEGPEND 354
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Frame = +2
Query: 455 GNRKGQAPG*GAEQRITG-----DWIC-KCGLYNFKRRQVCYRRTCNGKRSE 592
G R G G++++ G DW C C NF R VC R CN R E
Sbjct: 175 GARAGSYSEEGSQKKPAGAGRDNDWKCPNCNNINFAFRTVCNMRKCNTPRPE 226
>09_04_0430 + 17502387-17503505
Length = 372
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -2
Query: 273 EAVYHAMSVSGWRPALRADVPRLPYRRPIAEFPFVGVPPRAALLSTSPR 127
+A A + + A RA P P ++P + P PPRAA L T PR
Sbjct: 139 DAELDAAAAAAAAAAARAYHPPAPMQQPQPQPPPQPTPPRAAPLPTPPR 187
>02_01_0500 -
3623837-3624019,3624591-3624778,3625209-3626147,
3626311-3626479,3626701-3626871,3626948-3627016,
3627094-3627201,3627844-3627997,3628659-3628738,
3628822-3628914,3628951-3629073,3629165-3629915,
3630123-3630163,3630338-3630385
Length = 1038
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +2
Query: 509 DWICK-CGLYNFKRRQVCYR 565
DWIC CG NF RR C++
Sbjct: 411 DWICTICGCMNFARRTSCFQ 430
>11_01_0404 + 3071412-3071464,3073572-3074970
Length = 483
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 119 LRCLGEVERSAARGGTPTNGNSAIGRLYGSLGTSALSAGRHP 244
L+CLG+ R G+ GN G YGSL +S HP
Sbjct: 39 LKCLGD--RFGEMEGSNPPGNMTQGPSYGSLDLHGISKQMHP 78
>10_08_0614 -
19238064-19238132,19238381-19238407,19238436-19238510,
19238637-19239317,19239423-19239554,19239676-19239723,
19239828-19239878,19240015-19240134,19241121-19241261,
19241701-19241865,19241981-19242160,19242314-19242445,
19242536-19242643,19242779-19242883,19243217-19243321,
19243407-19243463,19243991-19244010,19244299-19244377,
19245021-19245080,19245562-19245615,19246535-19246600,
19246938-19246990,19247361-19247450,19248152-19248249,
19248348-19248721
Length = 1029
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 330 LGHGRDPGRGGHAESRARDEAVYHAMSVSGWRPALRA 220
L H R PGR G + R RDE ++ + + L+A
Sbjct: 819 LAHSRVPGRKGRSAGRGRDEVGTWSLDLEDMKMELQA 855
>10_08_0373 - 17286104-17288839
Length = 911
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 196 PVWEPRNVSPECRSPSRHRHRMIDG 270
P PR +SP C R RH ++DG
Sbjct: 10 PPSPPRALSPRCSLQPRARHHLLDG 34
>08_02_1473 -
27358162-27358275,27358968-27359024,27359102-27359245,
27359770-27359934,27360020-27360208,27360301-27360535,
27360826-27360932,27361020-27361103,27361185-27361695,
27361793-27361854,27363373-27363456
Length = 583
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -2
Query: 300 GHAESRARDEAVYHAMSVSGWRPALRADVPRLPYRRPIAEFPFVGVPPRAAL 145
G S DEAV ++ G P A LPY + + +P V PP L
Sbjct: 363 GGISSEEHDEAVMLEAAMFGGIPGRAAYPFSLPYHQNSSRYPTVAHPPSPTL 414
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,783,253
Number of Sequences: 37544
Number of extensions: 345790
Number of successful extensions: 1215
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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