Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0273
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-13|AAO21393.1|  695|Caenorhabditis elegans Hypothetical...    32   0.38 
AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical...    32   0.38 
AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical...    32   0.38 
AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical ...    32   0.38 
AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical ...    32   0.38 
AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...    28   6.3  
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...    28   6.3  
AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...    28   6.3  

>AF000263-13|AAO21393.1|  695|Caenorhabditis elegans Hypothetical
           protein T08B2.5g protein.
          Length = 695

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 509 DWICK-CGLYNFKRRQVCYRRTCNGKRSEGVFMEVMG 616
           DWIC  C + NF +RQ C++  C   + + + +E +G
Sbjct: 89  DWICAHCSMNNFVKRQTCFK--CEISKDQSMELEKLG 123


>AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical
           protein T08B2.5f protein.
          Length = 838

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 509 DWICK-CGLYNFKRRQVCYRRTCNGKRSEGVFMEVMG 616
           DWIC  C + NF +RQ C++  C   + + + +E +G
Sbjct: 232 DWICAHCSMNNFVKRQTCFK--CEISKDQSMELEKLG 266


>AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical
           protein T08B2.5c protein.
          Length = 866

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 509 DWICK-CGLYNFKRRQVCYRRTCNGKRSEGVFMEVMG 616
           DWIC  C + NF +RQ C++  C   + + + +E +G
Sbjct: 260 DWICAHCSMNNFVKRQTCFK--CEISKDQSMELEKLG 294


>AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical
           protein T08B2.5a protein.
          Length = 924

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 509 DWICK-CGLYNFKRRQVCYRRTCNGKRSEGVFMEVMG 616
           DWIC  C + NF +RQ C++  C   + + + +E +G
Sbjct: 318 DWICAHCSMNNFVKRQTCFK--CEISKDQSMELEKLG 352


>AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical
           protein T08B2.5b protein.
          Length = 925

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 509 DWICK-CGLYNFKRRQVCYRRTCNGKRSEGVFMEVMG 616
           DWIC  C + NF +RQ C++  C   + + + +E +G
Sbjct: 319 DWICAHCSMNNFVKRQTCFK--CEISKDQSMELEKLG 353


>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 477 QDEVQNNASPGIGS-ASVVYTTLKDVRSVTVELVMGKDRRVY 599
           Q+E+ +N S  I    S++    ++VRS+ ++  MGK +RVY
Sbjct: 145 QEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 186


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 477 QDEVQNNASPGIGS-ASVVYTTLKDVRSVTVELVMGKDRRVY 599
           Q+E+ +N S  I    S++    ++VRS+ ++  MGK +RVY
Sbjct: 114 QEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 155


>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 477 QDEVQNNASPGIGS-ASVVYTTLKDVRSVTVELVMGKDRRVY 599
           Q+E+ +N S  I    S++    ++VRS+ ++  MGK +RVY
Sbjct: 175 QEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,559,111
Number of Sequences: 27780
Number of extensions: 268722
Number of successful extensions: 710
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)