Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0273
(760 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g17975.1 68415.m02088 zinc finger (Ran-binding) family protei... 35 0.067
At2g26695.1 68415.m03202 zinc finger (Ran-binding) family protei... 31 0.83
At1g67325.1 68414.m07663 zinc finger (Ran-binding) family protei... 31 0.83
At5g25490.1 68418.m03033 zinc finger (Ran-binding) family protei... 31 1.1
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 30 1.5
At1g49990.1 68414.m05610 expressed protein ; expression supporte... 29 3.4
At5g28823.1 68418.m03544 hypothetical protein 29 4.4
At5g13140.1 68418.m01505 expressed protein 29 4.4
At4g38600.2 68417.m05463 HECT-domain-containing protein / ubiqui... 29 4.4
At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiqui... 29 4.4
At3g15680.1 68416.m01987 zinc finger (Ran-binding) family protei... 29 4.4
At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protei... 29 4.4
At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protei... 28 5.9
At3g58560.1 68416.m06527 endonuclease/exonuclease/phosphatase fa... 28 5.9
>At2g17975.1 68415.m02088 zinc finger (Ran-binding) family protein
contains Pfam domain, PF00641: Zn-finger in Ran binding
protein and others
Length = 268
Score = 34.7 bits (76), Expect = 0.067
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 503 TGDWICKCGLYNFKRRQVCYRRTCN 577
+GDWIC+CG +N+ R C + CN
Sbjct: 128 SGDWICRCGFHNYSSRIQC--KKCN 150
>At2g26695.1 68415.m03202 zinc finger (Ran-binding) family protein
contains Pfam profile PF00641: Zn-finger in Ran binding
protein and others
Length = 137
Score = 31.1 bits (67), Expect = 0.83
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = +2
Query: 503 TGDWICK---CGLYNFKRRQVCYRRTCNGKRSEG 595
TGDW+C CG++N+ R C++ C R G
Sbjct: 105 TGDWVCPRVGCGVHNYASRAECFK--CKTTRDYG 136
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Frame = +2
Query: 500 ITGDWIC---KCGLYNFKRRQVCYR 565
+ GDW C CG +N+ R CYR
Sbjct: 48 MAGDWYCGALNCGSHNYASRTSCYR 72
>At1g67325.1 68414.m07663 zinc finger (Ran-binding) family protein
similar to ZIS2 [Homo sapiens] GI:4191329; contains Pfam
profile PF00641: Zn-finger in Ran binding protein and
others
Length = 288
Score = 31.1 bits (67), Expect = 0.83
Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +2
Query: 509 DWIC-KCGLYNFKRRQVCYRRTCN 577
DW C CG NF R VC R CN
Sbjct: 197 DWTCPNCGNVNFSFRTVCNMRKCN 220
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Frame = +2
Query: 509 DWIC-KCGLYNFKRRQVCYRRTCNGKR 586
DWIC CG NF R C R C R
Sbjct: 25 DWICPSCGNVNFSFRTTCNMRNCTQPR 51
>At5g25490.1 68418.m03033 zinc finger (Ran-binding) family protein
contains Pfam domain, PF00641: Zn-finger in Ran binding
protein and others
Length = 170
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Frame = +2
Query: 452 YGNRKGQAPG*GAEQRITGDWICK---CGLYNFKRRQVCYRRTCNGKR 586
+G G G +GDWIC C +NF R C+R CN +
Sbjct: 117 FGGSSSGGGGTGRSPWKSGDWICPRSGCNEHNFASRSECFR--CNAPK 162
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Frame = +2
Query: 506 GDWICK---CGLYNFKRRQVCYRRTCNGKRSE 592
GDW C CG +NF R C++ C + E
Sbjct: 62 GDWYCNLGDCGTHNFANRSSCFK--CGAAKDE 91
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 509 DWICK-CGLYNFKRRQVCYRRTCNGKRSE 592
DWIC CG NF RR C++ CN +++
Sbjct: 407 DWICTICGCINFARRTSCFQ--CNEPKTK 433
>At1g49990.1 68414.m05610 expressed protein ; expression supported
by MPSS
Length = 371
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 528 VYTTLKDVRSVTVELVMGKDRRVYLWR 608
V ++ K VR+V +EL+ +D +YLWR
Sbjct: 119 VVSSFKMVRTVQMELIDRRDEGMYLWR 145
>At5g28823.1 68418.m03544 hypothetical protein
Length = 568
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 122 RCLGEVERSAARGGTPTNGNSAIGRLYGSLGTSALSAG 235
+CL + SA GTP N NS + +L T+ +S G
Sbjct: 335 KCLEKTVVSACNNGTPLNENSIVNASTKALDTAIVSNG 372
>At5g13140.1 68418.m01505 expressed protein
Length = 267
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = -2
Query: 291 ESRARDEAVYHAMSVSGWRPALRADVPRLPYRRPIAEFPFVGVP 160
E + RD + W P D+P LP P FPF +P
Sbjct: 191 EKKFRDSKFFWPYLAPYWFPWPYPDLPPLPTLPPFPSFPFPSLP 234
>At4g38600.2 68417.m05463 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12 (TRIP12)
{Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1794
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 7/38 (18%)
Frame = -2
Query: 519 QIQSPVMRCSAPHPG-------ACPFLFPYQTCPSHDY 427
QIQ + CS P ACPFLFP+QT + Y
Sbjct: 1305 QIQDALALCSGSLPSWCYQLTRACPFLFPFQTRRQYFY 1342
>At4g38600.1 68417.m05464 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12 (TRIP12)
{Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1888
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 7/38 (18%)
Frame = -2
Query: 519 QIQSPVMRCSAPHPG-------ACPFLFPYQTCPSHDY 427
QIQ + CS P ACPFLFP+QT + Y
Sbjct: 1396 QIQDALALCSGSLPSWCYQLTRACPFLFPFQTRRQYFY 1433
>At3g15680.1 68416.m01987 zinc finger (Ran-binding) family protein
contains Pfam domain, PF00641: Zn-finger in Ran binding
protein and others
Length = 164
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Frame = +2
Query: 506 GDWIC---KCGLYNFKRRQVCYR 565
GDW C CG +NF R C++
Sbjct: 63 GDWYCTVGNCGTHNFASRSTCFK 85
>At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|Q27294 RNA-binding protein cabeza {Drosophila
melanogaster}; contains Pfam profiles: PF00076 RNA
recognition motif (aka RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 372
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Frame = +2
Query: 455 GNRKGQAPG*GAEQRITGDWIC---KCGLYNFKRRQVCYRRTCNGKRSEGVFMEVMG 616
G +GQA + GDW+C C NF R VC R C R G MG
Sbjct: 120 GRGRGQADSSAKPWQQDGDWMCPNTSCTNVNFAFRGVCNR--CGTARPAGASGGSMG 174
>At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protein
contains Pfam domain, PF00641: Zn-finger in Ran binding
protein and others
Length = 758
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +2
Query: 491 EQRITG-DWIC-KCGLYNFKRRQVCYRRTCNGKRSEGV 598
++++TG +W C +C YN+ R C R C R +
Sbjct: 305 KRQLTGSEWECPQCDFYNYGRNVACLRCDCKRPRDSSL 342
>At3g58560.1 68416.m06527 endonuclease/exonuclease/phosphatase
family protein similar to SP|P31384 Glucose-repressible
alcohol dehydrogenase transcriptional effector (Carbon
catabolite repressor protein 4) {Saccharomyces
cerevisiae}; contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 602
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 624 RCSRNTWHHKRLLFRRLDALTTEENILEEL 713
+C + W H R+L R + TE N EEL
Sbjct: 96 KCFSDAWQHHRVLHERAASAATEGNDEEEL 125
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,691,919
Number of Sequences: 28952
Number of extensions: 252009
Number of successful extensions: 615
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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