Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0272
(716 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom... 51 2e-07
SPAC1782.03 |||microfibrillar-associated protein family protein|... 28 1.2
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 28 1.2
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 27 2.7
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 2.7
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 26 6.2
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 25 8.2
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 25 8.2
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 25 8.2
>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 266
Score = 50.8 bits (116), Expect = 2e-07
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = -3
Query: 501 VLMAVGITAAVCLGLTLFALQTKWDFTMMGGVLLCATIVLLVFGIVAIFVKG-KVITLVY 325
+L AV IT V + LT F Q+KWDF+ +GG L + L++ ++ FV I + +
Sbjct: 148 ILEAVFITLGVFVALTAFTFQSKWDFSRLGGFLYVSLWSLILTPLIFFFVPSTPFIDMAF 207
Query: 324 ASLGALIFSIYL 289
A G L+F Y+
Sbjct: 208 AGFGTLVFCGYI 219
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 587 PTNFIFLAIFTAAQSSLLGISASVY 513
P N+IFL +FTA + LG + + +
Sbjct: 119 PRNYIFLFLFTALEGLTLGTAITFF 143
>SPAC1782.03 |||microfibrillar-associated protein family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -2
Query: 700 DQKSGWPKKSLHVLGGLHSADSLSHR 623
D K+ +K+LH LGGLHS LS R
Sbjct: 327 DPKNPILQKNLHRLGGLHSDSPLSKR 352
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +1
Query: 208 RLRAAK--MYSSGEMLYFACPPSSAGCRREVNGEYESAQGRVHERYDLTFHEYGHDTE 375
+LR AK + S E+ PPSS RR V G + R+ + + + +DTE
Sbjct: 47 KLRRAKNGLISMTELQQKNVPPSSRSPRRRVAGVTNNVTARISSKRKINMVDEANDTE 104
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 27.1 bits (57), Expect = 2.7
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -2
Query: 538 CSALAQASTKGCGADGSWHNGGRVPGLDSVRSADQVGLHHDGRRAAL 398
C+ L KG G+ +G + LD+ RSA + GL HD A L
Sbjct: 62 CTELKPDWAKGWSRKGAALHG--LGDLDAARSAYEEGLKHDANNAQL 106
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = -2
Query: 652 LHSADSLSHRDGVLSRRETQKLRRTSYSWPSSRQRRAPCSALAQASTKGCGADGSWHNGG 473
+ S + SHR VLS + L +++S SS S + + + G S+ +
Sbjct: 3615 IESESTASHRSSVLSELSSYDLSTSAFSSSSSEPSTLDYSVSSSSLSSSIGVGSSFSSNS 3674
Query: 472 RV 467
+V
Sbjct: 3675 KV 3676
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 25.8 bits (54), Expect = 6.2
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 1/80 (1%)
Frame = +1
Query: 364 HDTEYKEDDGGAEQHAAHHGEVPLGLQSEQSQAQAHGRRYANCHQHRIPS*TL-ALMPSR 540
H+T +GG +H G + +G + G N +P ++ AL+ R
Sbjct: 244 HNTSNFRPEGGGHRHRRSTGSLSVGSSGSGFSSGGSGNPRKNLFSPYLPQSSIPALLAER 303
Query: 541 ELCAAVKMARNMKFVGAFAS 600
L + + AF S
Sbjct: 304 RLVTGILIVSKKNRSDAFVS 323
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 334 RYDLTFHEYGHDTEYKEDD 390
+YDL F++ DTE KE D
Sbjct: 538 QYDLEFYDLDFDTEKKEPD 556
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 645 VLIVCLIAMACCPDVRRKSSDELHIPGHL 559
+L+ +A A CP +RR DE+H G +
Sbjct: 844 MLLQPALANAWCPKIRRIIFDEIHCIGQM 872
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 25.4 bits (53), Expect = 8.2
Identities = 31/114 (27%), Positives = 43/114 (37%)
Frame = -2
Query: 667 HVLGGLHSADSLSHRDGVLSRRETQKLRRTSYSWPSSRQRRAPCSALAQASTKGCGADGS 488
H L + SLS + + S + L+ S+ S RQ A +Q S K + GS
Sbjct: 196 HELQTSQDSPSLSATNQLSSSDTLEPLQYPPSSFGSQRQFNA-----SQDSPKRSPSKGS 250
Query: 487 WHNGGRVPGLDSVRSADQVGLHHDGRRAALRHHRPPCIRYRGHIRER*GHNARV 326
W + R P L GLH RR+ + + P H HN V
Sbjct: 251 WSSILRRPSLTYSPKRQSTGLH---RRSLTNYFKFP--HRNAHQHNAIAHNPSV 299
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,736,056
Number of Sequences: 5004
Number of extensions: 52075
Number of successful extensions: 149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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