Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0272
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0292 - 32886148-32886354,32886997-32887154,32887265-328873... 55 6e-08
03_05_1105 + 30438140-30438350,30438448-30438926 48 6e-06
03_06_0293 - 32889813-32890019,32890144-32890301,32891310-328914... 48 7e-06
07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155 48 1e-05
07_01_0554 - 4121692-4121895,4121991-4122148,4123241-4123354,412... 43 2e-04
11_06_0192 + 21128298-21128829,21129341-21129407,21131169-211312... 41 0.001
05_07_0034 - 27200513-27200605,27200750-27200802,27201724-272017... 33 0.30
05_04_0016 - 17176360-17176881 30 2.1
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 30 2.1
08_02_0221 + 14443016-14443468 29 2.8
03_06_0404 + 33692534-33693607 29 2.8
03_02_0195 - 6325907-6326173,6326996-6327149,6327245-6327336,632... 29 3.7
04_01_0541 - 6998030-6998521,7000666-7000732,7001057-7001202 29 4.9
12_02_0960 - 24826918-24827373,24828357-24828471,24831110-248312... 28 8.5
12_01_0667 + 5674322-5674393,5674455-5675159,5676051-5676087,567... 28 8.5
03_05_0511 + 25056018-25059107 28 8.5
02_04_0540 + 23748610-23748930,23749054-23749157,23749889-237500... 28 8.5
>03_06_0292 -
32886148-32886354,32886997-32887154,32887265-32887378,
32887660-32887924
Length = 247
Score = 54.8 bits (126), Expect = 6e-08
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Frame = -3
Query: 501 VLMAVGITAAVCLGLTLF---ALQTKWDFTMMGGVLLCATIVLLVFGIVAIFV-KGKVIT 334
+ A G+TAA+ +GLT + A + +DF +G L AT+VL ++ I+ IF+ G+
Sbjct: 130 IFQAAGMTAAIVIGLTCYTFWAAKRGYDFEFLGPFLFAATLVLFLYAIITIFLPMGRTGK 189
Query: 333 LVYASLGALIFSIYL 289
LVY + ALIFS ++
Sbjct: 190 LVYGCVAALIFSGFI 204
>03_05_1105 + 30438140-30438350,30438448-30438926
Length = 229
Score = 48.4 bits (110), Expect = 6e-06
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Frame = -3
Query: 507 DAVLMAVGITAAVCLGLTLF---ALQTKWDFTMMGGVLLCATIVLLVFGIVAIFVK-GKV 340
+ +L + +TAAV + LT + A + DF+ +G L A ++L+VF ++ +F G+V
Sbjct: 110 EVILESAILTAAVVVSLTAYTFWAARRGHDFSFLGPFLFAAVMILMVFALIQVFFPLGRV 169
Query: 339 ITLVYASLGALIFSIYL 289
++Y L AL+F Y+
Sbjct: 170 SLMIYGGLAALVFCGYI 186
>03_06_0293 -
32889813-32890019,32890144-32890301,32891310-32891423,
32891531-32891777
Length = 241
Score = 48.0 bits (109), Expect = 7e-06
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Frame = -3
Query: 501 VLMAVGITAAVCLGLTLF---ALQTKWDFTMMGGVLLCATIVLLVFGIVAIFVK-GKVIT 334
+ A +TA V + LT + A + DF +G L A +VL++F ++ IF GK+
Sbjct: 124 IFEAAALTAVVVISLTAYTFWAAKRGHDFNFLGPFLFSAVMVLILFSLIQIFFPLGKISE 183
Query: 333 LVYASLGALIFSIYL 289
++Y L +L+FS Y+
Sbjct: 184 MIYGGLASLVFSGYI 198
>07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155
Length = 220
Score = 47.6 bits (108), Expect = 1e-05
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Frame = -3
Query: 504 AVLMAVGITAAVCLGLTLF---ALQTKWDFTMMGGVLLCATIVLLVFGIVAIFVK-GKVI 337
A++ A +T + GLTL+ A + DF+ + L+ A +VL+++G++ + V GKV
Sbjct: 102 AIIEAASLTFGLVFGLTLYTFWAAKRGHDFSFLRPFLVAAFLVLVLYGLIQMLVPTGKVA 161
Query: 336 TLVYASLGALIFSIYL 289
T VY + AL+FS ++
Sbjct: 162 TTVYGCVAALVFSGFI 177
>07_01_0554 -
4121692-4121895,4121991-4122148,4123241-4123354,
4123824-4124082
Length = 244
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Frame = -3
Query: 501 VLMAVGITAAVCLGLTLF---ALQTKWDFTMMGGVLLCATIVLLVFGIVAI-FVKGKVIT 334
+L + +T V LT + A + DF+ +G L + IVLLVF + I F G++
Sbjct: 128 ILESAILTTVVVFSLTAYTFWAAKRGRDFSFLGPFLFASLIVLLVFAFIQILFPLGRISQ 187
Query: 333 LVYASLGALIFSIYL 289
++Y + +LIFS Y+
Sbjct: 188 MIYGGIASLIFSGYI 202
>11_06_0192 +
21128298-21128829,21129341-21129407,21131169-21131211,
21131301-21131367,21131613-21131770,21131863-21132057
Length = 353
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Frame = -3
Query: 501 VLMAVGITAAVCLGLTLF---ALQTKWDFTMMGGVLLCATIVLLVFGIVAI-FVKGKVIT 334
VL A +TA +GLT+F A DFT M L + +VLL + I+ I F G+
Sbjct: 240 VLQAAILTAVAVIGLTIFTFWAAHRGHDFTFMYPFLAASLLVLLAYLIIQICFPLGRAGM 299
Query: 333 LVYASLGALIFSIYL 289
+Y L ++FS ++
Sbjct: 300 TIYGCLATVLFSAFI 314
>05_07_0034 -
27200513-27200605,27200750-27200802,27201724-27201797,
27202762-27202830,27203070-27204148
Length = 455
Score = 32.7 bits (71), Expect = 0.30
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Frame = -2
Query: 640 DSLSHRDGVLSRRETQKLRRTS--YSWPSSRQRRAPCSALAQASTKGCGADG-SWHNGGR 470
D + VL+ + K+RR S + WP R A + A+ + G A+ SW R
Sbjct: 243 DDIKANTRVLAAAQVSKIRRMSDAWGWPIHRLD-ASDTVRARLTRAGSAAESASWERDVR 301
Query: 469 VPGLDSVRS--ADQ 434
PGL ++RS ADQ
Sbjct: 302 GPGLATIRSFLADQ 315
>05_04_0016 - 17176360-17176881
Length = 173
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -2
Query: 559 SRQRRAPCSALAQASTKGC-GADGSWHNG 476
+RQ +A AL A GC G G WHNG
Sbjct: 67 ARQAKAGTVALVAAGFAGCFGGGGRWHNG 95
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -2
Query: 424 HHDGRRAALRHHRPPCIRYRGHIRER*GHNARVRVPGRSH 305
+H G RHH PP GH +R H+ GR+H
Sbjct: 557 YHGGHHQRRRHHHPPAWDVEGHHHDRQQHSHEA---GRNH 593
>08_02_0221 + 14443016-14443468
Length = 150
Score = 29.5 bits (63), Expect = 2.8
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Frame = -2
Query: 694 KSGWPKKSLHVLGGLHSADSLSHRDGVLSRRETQKLRRTSYSWPSSRQRRAPCSALAQAS 515
++G K V G + A + + D ++ ++RR + +++ +A A A
Sbjct: 23 RAGMDKSRAAVQGQVEKATARNAAD-----KDAAEVRRQERLQAAEEEKQHAMAANAAAK 77
Query: 514 TKGCGADGSWHNGGRVPGLDSVRSADQVGLH-HDG 413
+ G G++H PG+D R+A G H DG
Sbjct: 78 ERATGGAGAYHPSQGAPGVDP-RAAQPTGGHVQDG 111
>03_06_0404 + 33692534-33693607
Length = 357
Score = 29.5 bits (63), Expect = 2.8
Identities = 22/78 (28%), Positives = 37/78 (47%)
Frame = -2
Query: 613 LSRRETQKLRRTSYSWPSSRQRRAPCSALAQASTKGCGADGSWHNGGRVPGLDSVRSADQ 434
L+ R+ +K+ R W R RR + + + +G AD +W P +D+VRS
Sbjct: 261 LACRQHRKIERLDRMW---RARRVDATEVFRR--RGHAADDAWQRLVAAPCIDAVRSF-- 313
Query: 433 VGLHHDGRRAALRHHRPP 380
L D R+++ +PP
Sbjct: 314 --LFEDQERSSIAAGKPP 329
>03_02_0195 -
6325907-6326173,6326996-6327149,6327245-6327336,
6327433-6327534,6328406-6328528,6328635-6328683,
6328759-6328854,6328937-6329276,6329428-6329643,
6329759-6329864,6330144-6330192,6330519-6330792,
6330870-6330960,6331663-6331994,6332084-6332261,
6332815-6332872,6332956-6333089
Length = 886
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -2
Query: 628 HRDGVLSRRETQKLRRTSYSWPSSRQRRAPCSALAQASTKGCGADGSW 485
H D L+ R + LR + S P + +RR +A A A G A W
Sbjct: 19 HEDLPLAERRRRLLRPPAESKPPAPERREASAAAAAAEDSGGAAQQGW 66
>04_01_0541 - 6998030-6998521,7000666-7000732,7001057-7001202
Length = 234
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -2
Query: 550 RRAPCSALAQAS-TKGCGADGSWHNGGRVPGLDSVRSADQVGLHHDG 413
RR C+ALA++ G DG ++GG G V + Q GL DG
Sbjct: 146 RRHICAALARSGGVSAGGGDGVSNSGGDGDGNGRVSAIGQRGLDSDG 192
>12_02_0960 -
24826918-24827373,24828357-24828471,24831110-24831236,
24831517-24831559,24831964-24832022,24832850-24833141
Length = 363
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 352 HEYGHDTEYKEDDGGAEQHAAHHGEVPLGLQSEQSQA 462
H+YG D Y +DDGG AAH G+ + + + A
Sbjct: 286 HKYG-DRHYDDDDGGY-YTAAHRGQAAAAMSAAAAAA 320
>12_01_0667 +
5674322-5674393,5674455-5675159,5676051-5676087,
5676238-5676335,5676452-5676475
Length = 311
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -3
Query: 654 AFIVLIVCLIAMACCPDVRRKSSDELHIPGHLHGSAELPARH 529
AF+ ++ L+ +A CP + +++ EL +P H S L H
Sbjct: 3 AFVYFVLLLLILAVCPPL-QQARGELPLPMHAAASPYLGLHH 43
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -2
Query: 493 GSWHNGGRVPGLDSVRSADQVGLHHDGRRAALRHHRPPCIRYRGHIRER*G 341
G W G + L V+S+D V DGR+ L +R R H+ ER G
Sbjct: 739 GPWQVGPNLLLLPDVKSSDSVITSQDGRQGIL-------VRGRSHVSERLG 782
>02_04_0540 +
23748610-23748930,23749054-23749157,23749889-23750063,
23750149-23750212,23750867-23750946,23751128-23751287,
23751415-23751476,23751607-23751666,23751824-23751882,
23752194-23752275,23752691-23752740,23752847-23752980,
23753508-23753590,23754070-23754142,23754461-23754477
Length = 507
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = -2
Query: 565 PSSRQRRAPCSALAQASTKGCGADGSWHNGGRVPGLDSVR-SADQ-VGLHHDG 413
P+++ R P LA+ G DG+W GR +D++R DQ +G + +G
Sbjct: 27 PTNQPRLEPSKTLAKGRGSAGGGDGAW---GRRCAMDAIRKQLDQLMGANRNG 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,690,203
Number of Sequences: 37544
Number of extensions: 429341
Number of successful extensions: 1655
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1650
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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