Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0272
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44648| Best HMM Match : UPF0005 (HMM E-Value=0.00022)               67   1e-11
SB_17748| Best HMM Match : DUF1312 (HMM E-Value=0.0024)                31   0.93 
SB_47098| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_26341| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_54678| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_38048| Best HMM Match : CUB (HMM E-Value=1.4e-31)                   29   5.0  
SB_34537| Best HMM Match : UPF0005 (HMM E-Value=6.5e-05)               29   5.0  
SB_39564| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_34635| Best HMM Match : PE (HMM E-Value=0.82)                       28   6.6  
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)                   28   6.6  
SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1)                      28   8.7  

>SB_44648| Best HMM Match : UPF0005 (HMM E-Value=0.00022)
          Length = 192

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 32/70 (45%), Positives = 47/70 (67%)
 Frame = -3

Query: 498 LMAVGITAAVCLGLTLFALQTKWDFTMMGGVLLCATIVLLVFGIVAIFVKGKVITLVYAS 319
           +M   +T  + + + L     ++DFTMMGG L  A IVL+ FG +AIF   +V+ +VYAS
Sbjct: 75  VMYAQLTLILKIVIILLFWNFQYDFTMMGGFLFVALIVLICFGFLAIFFHNRVVQIVYAS 134

Query: 318 LGALIFSIYL 289
           LGAL+F++YL
Sbjct: 135 LGALLFALYL 144



 Score = 31.9 bits (69), Expect = 0.53
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = -1

Query: 266 GGQAKYSISPEEYIFAA 216
           GG   YSISPEEYIFAA
Sbjct: 153 GGGKMYSISPEEYIFAA 169


>SB_17748| Best HMM Match : DUF1312 (HMM E-Value=0.0024)
          Length = 1272

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = -3

Query: 501  VLMAVGITAAVCLGLTLFALQTKWDFTMMGGVLLCATIVLLVFGIVAIFV 352
            ++M +GI  A+C   T     T+ D + +GG +L  +  LL+  I+A+F+
Sbjct: 913  IIMMIGIILAMCGASTFDTPSTRGDLSDLGGKVLMGSAGLLI--ILALFI 960


>SB_47098| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 580

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -3

Query: 447 ALQTKWDFTMMGGVLLCATIVLLV-FGIVA-IFVKGKVITLVYASLG 313
           AL  K  + ++  +  C T+   + +G +A + V G+VI ++YA LG
Sbjct: 227 ALSAKPQWNILNSIYFCMTVTTTIGYGSLAPVTVPGRVICVIYALLG 273


>SB_26341| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 329

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
 Frame = -2

Query: 526 AQASTKGCGADGSW-HNGGRVPG--LDSVRSADQVGLHH-DGRRAALRHHRPPCIRYRGH 359
           A   T+ C  + +W   G R+ G    S R  + V   H D +  A +HH  P     GH
Sbjct: 224 ANIGTRRCRQNRAWLTRGKRIAGELRYSTRKHENVKARHTDSKHIAYQHHLEPEHEEHGH 283

Query: 358 ------IRER*GHNARVRVPGRSHILHLPL 287
                   ER  H+++ + P R   +  PL
Sbjct: 284 GGHGHGDHEREHHSSQNQAPPRKPAMRAPL 313


>SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1232

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = +1

Query: 322 RVHERYDLTFHEYGHDTEYKEDDGGAEQHAAHHGEVPLGLQSE-QSQAQAHGR--RYANC 492
           R H+   L   ++    E++E DG   QHA + GEV LG + +    A A     +Y  C
Sbjct: 667 RGHDVQSLKALQWLKYVEHREGDGVFIQHAGNRGEVRLGGRIKVDGYAAATNTVYQYQGC 726

Query: 493 HQHRIP 510
             H  P
Sbjct: 727 FYHGCP 732


>SB_54678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -2

Query: 700 DQKSGWPKKSLHVLGGL-HSADSLSHRDGVLSRRETQKLRRTSYSWPSSRQRR 545
           D  S W  ++LH++GGL     ++  R   LS R+  ++R T+ S     Q R
Sbjct: 144 DSLSDWMVENLHIIGGLAFGFAAIQMRITTLSTRKLTQMRITTLSTRKLTQMR 196


>SB_38048| Best HMM Match : CUB (HMM E-Value=1.4e-31)
          Length = 551

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = -3

Query: 483 ITAAVCLGLTLFALQTK-WDFTMMGGVLLCATIVLLVFGIVAIFVKGKVITLVYASLGAL 307
           I  AV L + L A+    W   + GG ++  ++   +  +  IFV G  +       G L
Sbjct: 452 IAVAVSLFILLAAIAHMIWKINIHGGEVMRISMCASIIYMEIIFVVGANVKAEQTLCGFL 511

Query: 306 IFSIYLSTTPS**W 265
            FSIY S      W
Sbjct: 512 SFSIYFSVLAQFCW 525


>SB_34537| Best HMM Match : UPF0005 (HMM E-Value=6.5e-05)
          Length = 179

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -3

Query: 381 LVFGIVAIFVKGKVITLVYASLGALIFSIYL 289
           L+FG +  F +  ++ L YA LGAL+FS ++
Sbjct: 107 LLFGFM--FFQSDILELAYAVLGALLFSAFI 135


>SB_39564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = -3

Query: 228 HLRGPQPLLGHHQHIPVHSDHHRSFKRLGV*ISTHVPFETRVL 100
           H    + L  H QH   HSD H    R    ++TH P  TR L
Sbjct: 44  HAHSTRSLNTHTQH--AHSDTHTQHARSIRTLNTHTPHSTRTL 84



 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = -3

Query: 228 HLRGPQPLLGHHQHIPVHSDHHRSFKRLGV*ISTHVPFETRVL 100
           H    + L  H QH   HSD H    R    ++TH P  TR L
Sbjct: 231 HAHSTRSLNTHTQH--AHSDTHTQHARSIRTLNTHTPHSTRTL 271


>SB_34635| Best HMM Match : PE (HMM E-Value=0.82)
          Length = 436

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 298 GEYESAQGRVHERYDLTFHEYGHDTEYK 381
           GE E  Q   H+R   +FHE  H+ +Y+
Sbjct: 291 GEIERNQREYHQRNIKSFHEKAHEDDYR 318


>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
          Length = 509

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
 Frame = -3

Query: 384 LLVFGIVAIFVKGKVITLVYASLGALIF----SIYLSTT---PS**WGASKVQHLA--RG 232
           L++F + A+     ++ LV  +L A +F    SI+ S++   PS    +S  +HL   R 
Sbjct: 178 LVIFTVTALVSPIIIVHLVIFTLTAFVFPFISSIFSSSSLSPPSSLQSSSPSRHLHCHRP 237

Query: 231 VHLRGPQPLLGHHQHIPVHSDHHRSFKRL 145
                 +P   HH H P  S+HHR  + L
Sbjct: 238 RLSNHHRPSRHHHCHRPRLSNHHRPSRHL 266


>SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1)
          Length = 244

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
 Frame = +1

Query: 277 GCRREVNGEYESAQGRVHERYDLTFHE-YG----HDTEYKEDDGGAEQHAAHHGE 426
           G  R+ +  YE   G  H ++ +T+ E +G    H   Y+E+ G   QH   H E
Sbjct: 188 GTHRQQHVTYEEEHG-THRQHHVTYEEKHGTHRQHHVTYEEEHGTHRQHHVTHKE 241


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,608,667
Number of Sequences: 59808
Number of extensions: 457696
Number of successful extensions: 1385
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1375
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)