Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0272
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g03070.1 68414.m00281 expressed protein low similarity to N-m...    48   5e-06
At3g63310.1 68416.m07121 expressed protein low similarity to N-m...    48   6e-06
At4g14730.1 68417.m02265 transmembrane protein-related low simil...    44   1e-04
At4g02690.1 68417.m00364 hypothetical protein low similarity to ...    44   1e-04
At4g15470.1 68417.m02364 expressed protein low similarity to N-m...    31   1.0  
At5g61510.1 68418.m07718 NADP-dependent oxidoreductase, putative...    29   2.3  
At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family pr...    29   2.3  
At5g48385.1 68418.m05980 expressed protein                             28   5.4  
At5g26130.1 68418.m03108 pathogenesis-related protein, putative ...    28   5.4  
At3g60230.1 68416.m06731 hypothetical protein                          27   9.4  
At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zin...    27   9.4  
At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zin...    27   9.4  
At2g06845.1 68415.m00766 expressed protein                             27   9.4  

>At1g03070.1 68414.m00281 expressed protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104; contains Pfam
           profile PF01027: Uncharacterized protein family UPF0005
          Length = 247

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
 Frame = -3

Query: 501 VLMAVGITAAVCLGLTLF---ALQTKWDFTMMGGVLLCATIVLLVFGIVAIFVK-GKVIT 334
           +L A  +T  V L LT++   A +  +DF  +G  L  A IVL+VF ++ IF   G++  
Sbjct: 131 ILEAAILTTVVVLSLTVYTFWAAKKGYDFNFLGPFLFGALIVLMVFALIQIFFPLGRISV 190

Query: 333 LVYASLGALIFSIYL 289
           ++Y  L A+IF  Y+
Sbjct: 191 MIYGCLAAIIFCGYI 205


>At3g63310.1 68416.m07121 expressed protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104; contains Pfam
           profile PF01027: Uncharacterized protein family UPF0005
          Length = 239

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
 Frame = -3

Query: 501 VLMAVGITAAVCLGLTLF---ALQTKWDFTMMGGVLLCATIVLLVFGIVAI-FVKGKVIT 334
           +L +V +TA V + LTL+   A +   DF  +G  L  A IVL+VF  + I F  GK+  
Sbjct: 122 ILESVILTAVVVISLTLYTFWAAKRGHDFNFLGPFLFGAVIVLMVFSFIQILFPLGKISV 181

Query: 333 LVYASLGALIFSIYL 289
           ++Y  L ++IF  Y+
Sbjct: 182 MIYGCLASIIFCGYI 196


>At4g14730.1 68417.m02265 transmembrane protein-related low
           similarity to transmembrane protein OTMP [Ovis aries]
           GI:9965379
          Length = 235

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 23/75 (30%), Positives = 47/75 (62%), Gaps = 4/75 (5%)
 Frame = -3

Query: 501 VLMAVGITAAVCLGLTLF---ALQTKWDFTMMGGVLLCATIVLLVFGIVAIF-VKGKVIT 334
           VL A  +TA +  GLT++   A++   DF+ +G  L  A +++LVF ++ IF   GK+ +
Sbjct: 121 VLEAAILTAVMVFGLTIYTFWAVKRGHDFSFLGPFLFGALLIILVFTLLQIFHPLGKLSS 180

Query: 333 LVYASLGALIFSIYL 289
           ++++ + +++F  Y+
Sbjct: 181 MIFSGIASIVFCGYI 195


>At4g02690.1 68417.m00364 hypothetical protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104, NMDA receptor
           glutamate-binding subunit [Rattus sp.] GI:8248741;
           contains Pfam profile PF01027: Uncharacterized protein
           family UPF0005
          Length = 248

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
 Frame = -3

Query: 501 VLMAVGITAAVCLGLTLF---ALQTKWDFTMMGGVLLCATIVLLVFGIVAI-FVKGKVIT 334
           +L +V +T+ V L LTL+   A +  +DF  +G  L  A  VL+ F ++ I F  G+V  
Sbjct: 131 ILESVILTSVVVLSLTLYTFWAARKGYDFNFLGPFLFGALTVLIFFALIQILFPLGRVSV 190

Query: 333 LVYASLGALIFSIYL 289
           ++Y  L ++IF  Y+
Sbjct: 191 MIYGCLVSIIFCGYI 205


>At4g15470.1 68417.m02364 expressed protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104; contains Pfam
           profile PF01027: Uncharacterized protein family UPF0005
          Length = 256

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 593 KAPTNFIFLAIFTAAQSSLLGISASVYEG 507
           K P N I LA+FT + S  +G+S ++ EG
Sbjct: 108 KHPVNLILLALFTVSLSFTVGVSCAMTEG 136


>At5g61510.1 68418.m07718 NADP-dependent oxidoreductase, putative
           similar to zeta-crystallin homolog TED2 from Zinnia
           elegans [gi:531096]; contains Pfam zinc-binding
           dehydrogenase domain PF00107
          Length = 406

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = +2

Query: 314 PRDAYTSVMTLPFTNMATIPNTRRTMVAQSSTPPIMVKSHLVCRANRVKPRHTAAVMPTA 493
           P  AY     LP   +  +P++   +VA S     M    L+ R  +V+P HT  V   A
Sbjct: 173 PMGAYAEEQILPADKVVPVPSSIDPIVAASIMLKGMTAQFLLRRCFKVEPGHTILVHAAA 232


>At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family
           protein 
          Length = 571

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 622 RDETDYQHYEGHPEHEG 672
           ++E DYQHY+ H  H G
Sbjct: 527 KNEVDYQHYDDHQHHNG 543


>At5g48385.1 68418.m05980 expressed protein
          Length = 558

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 460 AQAHGRRYANCHQHRIP 510
           A AHG  YANC+Q++ P
Sbjct: 535 APAHGNFYANCYQYQAP 551


>At5g26130.1 68418.m03108 pathogenesis-related protein, putative
           similar to PR-1a protein [Nicotiana tabacum] GI:19944;
           contains Pfam profile PF00188: SCP-like extracellular
           protein
          Length = 164

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = -2

Query: 574 YSWPSSRQRRAPCSALAQASTKGCGADGSWHNGGRVPGLDSVR 446
           Y+W  ++QR+  CS L  +++ G   +    +GG + G ++V+
Sbjct: 57  YAWNYAQQRKGDCS-LTHSNSNGLYGENLAWSGGALSGAEAVK 98


>At3g60230.1 68416.m06731 hypothetical protein 
          Length = 207

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 32/110 (29%), Positives = 43/110 (39%), Gaps = 3/110 (2%)
 Frame = -2

Query: 634 LSHRDGVLSRRETQKLRRTSYSWPSSRQRRAPCSALAQASTKGCGADGSWHNGGRVP--- 464
           +S+      R ETQ  RRT  S  + +Q++   S+ A    KG GA GS       P   
Sbjct: 1   MSYNQSRPDRSETQ-YRRTGRSTGNQQQQQQHRSSSAAGYGKGAGAPGSAPAPSTYPDNS 59

Query: 463 GLDSVRSADQVGLHHDGRRAALRHHRPPCIRYRGHIRER*GHNARVRVPG 314
            L S RS  + G    G +   R + PP      H      H+     PG
Sbjct: 60  SLSSNRSFKKPGNAQGGGQP--RVNLPPVNHPNNHNNGPNAHSRSQGEPG 107


>At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zinc
           transporter ZAT [Arabidopsis thaliana]
           gi|4206640|gb|AAD11757; member of the cation diffusion
           facilitator (CDF) family, or cation efflux (CE) family,
           PMID:11500563
          Length = 398

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 343 LTFHEYGHDTEYKEDDG-GAEQHAAHHGEVPLGLQSEQSQAQAHGRRYAN 489
           +T H + HD E+    G G ++H AH       L   ++Q  A  +R  N
Sbjct: 207 VTTHHHHHDHEHGHSHGHGEDKHHAHGDVTEQLLDKSKTQVAAKEKRKRN 256


>At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zinc
           transporter ZAT [Arabidopsis thaliana]
           gi|4206640|gb|AAD11757; member of the cation diffusion
           facilitator (CDF) family, or cation efflux (CE) family,
           PMID:11500563
          Length = 398

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 343 LTFHEYGHDTEYKEDDG-GAEQHAAHHGEVPLGLQSEQSQAQAHGRRYAN 489
           +T H + HD E+    G G ++H AH       L   ++Q  A  +R  N
Sbjct: 207 VTTHHHHHDHEHGHSHGHGEDKHHAHGDVTEQLLDKSKTQVAAKEKRKRN 256


>At2g06845.1 68415.m00766 expressed protein
          Length = 315

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -2

Query: 613 LSRRETQKLRRTSYSWPSSRQRRAPCSALAQASTKGCGADGSWHNGGRVPGL 458
           L +   QK+  T +  P     +A  +A    + +G   DGSW N  +  GL
Sbjct: 149 LWKSRNQKVFSTRFFTPEETLLKAITNAKEWLAAQGKSPDGSWRNDLKAAGL 200


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,902,076
Number of Sequences: 28952
Number of extensions: 301871
Number of successful extensions: 945
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)