Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0270
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe...    52   8e-08
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    28   1.1  
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr...    27   2.0  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    27   3.4  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    27   3.4  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    26   6.0  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    26   6.0  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    26   6.0  

>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 182

 Score = 52.0 bits (119), Expect = 8e-08
 Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
 Frame = +1

Query: 163 FLRLGRVHRFIISVRFRS*INMQLDRLRVPRYMAMKALESPQKDDDTKWLTYWVVYACFS 342
           FL    ++   + + +   +   L    +P + ++ A+E+  K DDT+WLTY++V +  +
Sbjct: 39  FLTAAGIYALFLFLNWGGFLLTNLLAFAMPAFFSINAIETTNKADDTQWLTYYLVTSFLN 98

Query: 343 IVEYFSD--SSSAGFHVLAVKVHLRDLVLPAD*IQRVLVIYYRIIRPYYQKHHGRI 504
           ++EY+S         + L   + L  L LP        +IY  +IRPY   H  RI
Sbjct: 99  VIEYWSQLILYYVPVYWLLKAIFLIWLALPK--FNGATIIYRHLIRPYITPHVIRI 152



 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 3/108 (2%)
 Frame = +2

Query: 131 EQKVGVNRLYIFLGLVAFTGL*LVFGFGAELICNSIGFVYPGTWL*RLWSHRRRMTIQNG 310
           E+  GV++LY+FL       L L   +G  L+ N + F  P  +         +      
Sbjct: 28  EKNFGVSKLYVFLTAAGIYALFLFLNWGGFLLTNLLAFAMPAFFSINAIETTNKADDTQW 87

Query: 311 LHIGWCTP---VFLSWSTFPIHRRLVSMYWLLKCIFGIWCYLPTEYNG 445
           L     T    V   WS   ++   V +YWLLK IF IW  LP ++NG
Sbjct: 88  LTYYLVTSFLNVIEYWSQLILY--YVPVYWLLKAIFLIWLALP-KFNG 132


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -2

Query: 395 TASTWKPADDESEKYSTIEKQAYTTQYVSHFVSSS 291
           T +T KPA  ++EK +T + +++TT   +H   SS
Sbjct: 149 TRATRKPAQPKAEKSTTSKSKSHTTTATTHTSRSS 183


>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 323

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +1

Query: 220 INMQLDRLRVPRYMAMKALESPQKDDDT 303
           I M++D L+  +   MK+ +SP+KD++T
Sbjct: 173 IEMEIDLLKRAQAELMKSEDSPEKDEET 200


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 216 APKPNTNYKPVNATKPKKMYNLFTPTFCSASS 121
           A K  + YKP+N  KP  + +   PT  S S+
Sbjct: 510 ATKSASKYKPINYPKPDNVLSFDIPTSVSRSA 541


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 273 SLHSHVPGYTKPIELHINSAPKPNTNYKPVN 181
           SL+ + P YT+   L +  +PK N+NY   N
Sbjct: 250 SLNPNFPQYTEKPALTLLQSPKQNSNYDTSN 280


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +2

Query: 83  SLNDKSKPWTKYFELAEQKVGVNRLYIFLGLVAFTGL*LVF 205
           +++ K+K  TKY      ++  N ++I+LG+  FT + LV+
Sbjct: 307 NMSYKAKLSTKYVFRVLAQLSENFIFIYLGMSLFTQVDLVY 347


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +1

Query: 274 LESPQKDDDTKWLTYWVVYACFSIVEYFSDSSSAGFHVLAVKVHLRDLVL 423
           L+ P       W  + ++   F   E+F+D +S GF  L +K+ +R  V+
Sbjct: 87  LDYPPLTAYVSWF-FGIIGHYFFNPEWFADVTSRGFESLELKLFMRSTVI 135


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 168 KKMYNLFTPTFCSASSKYFVHGLLLSFRLGSMLSLYS 58
           K +Y LF+P F     K  V G L  F    + S+YS
Sbjct: 656 KVLYYLFSPLFTLELWKLRVRGALSKFPTNCLRSVYS 692


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,093,999
Number of Sequences: 5004
Number of extensions: 69126
Number of successful extensions: 200
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)