Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0270
(702 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44) 72 4e-13
SB_28902| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=0.088) 32 0.52
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0) 31 1.2
SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_34748| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046) 29 3.6
SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_15448| Best HMM Match : Utp11 (HMM E-Value=0.89) 29 4.8
SB_8673| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-38) 29 4.8
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43) 28 6.4
SB_45507| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_9533| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44)
Length = 210
Score = 72.1 bits (169), Expect = 4e-13
Identities = 36/88 (40%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Frame = +1
Query: 250 PRYMAMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDSSSAGF--HVLAVKVHLRDLVL 423
P Y ++KA+ES QKDDDT+WL YWVV+A F+IVE+FSD + F + L + L +
Sbjct: 73 PAYQSVKAVESVQKDDDTQWLIYWVVFASFNIVEFFSDILLSWFPLYFLTKLIFLGWCMA 132
Query: 424 PAD*IQRVLVIYYRIIRPYYQKHHGRID 507
P +Y ++I+P+ +H +ID
Sbjct: 133 PVS-WNGSDTLYQKVIKPFVLRHQSQID 159
Score = 62.5 bits (145), Expect = 3e-10
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 6/132 (4%)
Frame = +2
Query: 68 DNIEPSLNDKSKPWTKYFELAEQKVGVNRLYIFLGLVAFTGL*LVFGFGAELICNSIGFV 247
+N+E L +K+ +T E+K V +LY+FLGLV L L+FG+GA+LI +GF
Sbjct: 13 ENLENWLEEKNY-FTDALGKVEEKTKVKKLYLFLGLVGVFSLYLIFGYGADLIVTVLGFA 71
Query: 248 YPGTWL*RLWSHRRRMTIQNGLHIGWCT--PVFLSWSTFPIHRRLV----SMYWLLKCIF 409
YP S + ++Q W VF S++ ++ +Y+L K IF
Sbjct: 72 YPA-----YQSVKAVESVQKDDDTQWLIYWVVFASFNIVEFFSDILLSWFPLYFLTKLIF 126
Query: 410 GIWCYLPTEYNG 445
WC P +NG
Sbjct: 127 LGWCMAPVSWNG 138
>SB_28902| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=0.088)
Length = 110
Score = 31.9 bits (69), Expect = 0.52
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 250 PRYMAMKALESPQKDDDTKWLTYW 321
P Y ++ A+E+P + TKWL YW
Sbjct: 87 PVYASISAIENPDYEIGTKWLMYW 110
>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
Length = 942
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 246 TKPIELHINSAPKPNTNYKPVNATKPKKMYNLFTPTFCSA 127
T+P+ H S+P+P + + PVN T P TP +A
Sbjct: 225 TQPLSSHSGSSPQPGSAFSPVN-TPPNAQAQQMTPPSSAA 263
>SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 411 PKMHFNSQYMETSRR*IGKVLHDRKTG-VHHPICKP 307
P + + ET R+ + +D +TG VHHP+C P
Sbjct: 127 PDVQIRNSIEETQRKVFSTLRNDTETGAVHHPLCLP 162
>SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 830
Score = 29.9 bits (64), Expect = 2.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 323 TQYVSHFVSSSFCGDSRAFIAMYR 252
T +V HFV + FCG++R+ + +R
Sbjct: 774 TAFVRHFVLARFCGENRSIVINFR 797
>SB_34748| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = -2
Query: 425 GSTRSRRCTLTASTWKPADDESEKYS 348
G RS CTL STW+ AD ESE+ S
Sbjct: 28 GQDRSALCTLVRSTWR-ADVESERDS 52
>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
Length = 797
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/74 (28%), Positives = 27/74 (36%)
Frame = -1
Query: 327 HHPICKPFCIVILLR*LQSLHSHVPGYTKPIELHINSAPKPNTNYKPVNATKPKKMYNLF 148
H C P R L S + +P YT P E H P P V+ + + F
Sbjct: 472 HQSPCTPVPAYTTPRVLHSPRTPLPTYTSPREHHSPRTPLPTYTSPRVHQSPRTPVPAYF 531
Query: 147 TPTFCSASSKYFVH 106
TP A + VH
Sbjct: 532 TPRVLPAYTTPRVH 545
>SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3307
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = +1
Query: 220 INMQLDRLRVPRYMAMKALESPQKDDDTKWLTYWVVYACFSIVEYF 357
+ +Q D + R + M+A+E+ K++ KW+ W + +Y+
Sbjct: 231 LELQEDMVASVRKVIMEAMEAYLKEERVKWVRDWPGQTVLCVTQYY 276
>SB_15448| Best HMM Match : Utp11 (HMM E-Value=0.89)
Length = 1328
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = +1
Query: 220 INMQLDRLRVPRYMAMKALESPQKDDDTKWLTYWVVYACFSIVEYF 357
+ +Q D + R + M+A+E+ K++ KW+ W + +Y+
Sbjct: 1070 LELQEDMVASVRKVIMEAMEAYLKEERVKWVRDWPGQTVLCVTQYY 1115
>SB_8673| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-38)
Length = 719
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 561 FFDCIKTAFNLVSLCWPYID 502
+F I + NL S CWPY+D
Sbjct: 356 WFSTIMESKNLPSFCWPYVD 375
>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
Length = 1806
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 515 QHRETRLNAVLMQSKNYNASRLVADTIRKTN*T 613
QH E+R+ AV + K N S I KTN T
Sbjct: 233 QHSESRITAVSCKEKTVNLSTKTQSQIHKTNNT 265
>SB_45507| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Frame = +2
Query: 302 QNGLHIGWCTPVFLSWSTFPIHRRLVSMYWLL--KCIFGIWCYL 427
Q +H WC + + I ++ + YW + K I WC L
Sbjct: 70 QKAIHACWCIEQKAIHACWCIEQKAIHAYWCIEQKAIHAYWCIL 113
>SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1601
Score = 27.9 bits (59), Expect = 8.4
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = -2
Query: 431 SAGSTRSR--RCTLTASTWKPADDESEKYSTIEKQAYTTQYVSHFVSSSFCGDSRAFIAM 258
SAG T S T+T S+ +DE K S+ + Q +T+ V + S R FI
Sbjct: 891 SAGGTSSASSETTITLSSQGKKEDEQNKGSSSDGQTPSTESVEMLIKS-----PRNFIRQ 945
Query: 257 YRGTRSR 237
+ G SR
Sbjct: 946 FNGMDSR 952
>SB_9533| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 444 GPR-DLLPYHSSLLPEASWSYRCMANTGKQD*MPF*CNQKIIMLPVWWQI 590
GP DLLP H S+ P A +++ ++ K M QK+I+L + +I
Sbjct: 415 GPNYDLLPIHFSVDPGADFAWEELSARVKDQHMELSMEQKLILLGKYLEI 464
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,042,045
Number of Sequences: 59808
Number of extensions: 522907
Number of successful extensions: 1503
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1489
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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