Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0270
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024201-6|AAF36016.1|  183|Caenorhabditis elegans Hypothetical ...    75   4e-14
Z81113-6|CAD21647.2|  295|Caenorhabditis elegans Hypothetical pr...    56   2e-08
AF045646-11|AAK29829.1|  205|Caenorhabditis elegans Hypothetical...    52   3e-07
U28412-5|AAC46595.1|  229|Caenorhabditis elegans Hypothetical pr...    38   0.009
AC024748-4|AAF60410.1|  251|Caenorhabditis elegans Hypothetical ...    33   0.15 
AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical...    31   0.80 
AF166167-1|AAD49856.1|  732|Caenorhabditis elegans adducin-relat...    28   5.6  
AF039043-5|AAK70639.1|  732|Caenorhabditis elegans Adducin prote...    28   5.6  

>AC024201-6|AAF36016.1|  183|Caenorhabditis elegans Hypothetical
           protein Y71F9B.3 protein.
          Length = 183

 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
 Frame = +1

Query: 250 PRYMAMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDSSSAGFHV--LAVKVHLRDLVL 423
           P YM++KA+ES  K+DDT+WLTYWV++A  S+VE+FS    A F V  L   + L  L L
Sbjct: 72  PAYMSIKAIESSNKEDDTQWLTYWVIFAILSVVEFFSVQIVAVFPVYWLFKSIFLLYLYL 131

Query: 424 PAD*IQRVLVIYYRIIRPYYQKHHGRID 507
           P+        +Y+R ++P   +H G ID
Sbjct: 132 PS--FLGAAKLYHRFVKPVAARHSGSID 157



 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 3/131 (2%)
 Frame = +2

Query: 50  KLQEYKDNIEPSLNDKSKPWTKYFELAEQKVGVNRLYIFLGLVAFTGL*LVFGFGAELIC 229
           ++Q+  D+++  L++ S   T      EQK GV RL++ LG+V    L L+FG  A+L+C
Sbjct: 6   QVQKVLDDVDKQLHEPSTV-TNVLATVEQKTGVKRLHLVLGVVGLQALYLIFGHSAQLVC 64

Query: 230 NSIGFVYPGTWL*RLWSHRRRMTIQNGLHIGWCTPVFLSWSTFPIHRRLVS---MYWLLK 400
           N +GFVYP     +      +      L   W     LS   F    ++V+   +YWL K
Sbjct: 65  NFMGFVYPAYMSIKAIESSNKEDDTQWLTY-WVIFAILSVVEF-FSVQIVAVFPVYWLFK 122

Query: 401 CIFGIWCYLPT 433
            IF ++ YLP+
Sbjct: 123 SIFLLYLYLPS 133


>Z81113-6|CAD21647.2|  295|Caenorhabditis elegans Hypothetical
           protein T03F6.6 protein.
          Length = 295

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
 Frame = +1

Query: 250 PRYMAMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDSSSAGFHV--LAVKVHLRDLVL 423
           P Y+++KA+ +   DDDT WL YW V+  FSI+++F+ S  + F +  +A    L  L L
Sbjct: 89  PAYVSVKAIRTEGTDDDTMWLIYWTVFGAFSIIDFFAASIMSYFPIYWVAKAAFLLYLYL 148

Query: 424 PAD*IQRVLVIYYRIIRPY 480
           P        VIY+++I P+
Sbjct: 149 PE--THGSHVIYHQLIDPF 165



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
 Frame = +2

Query: 131 EQKVGVNRLYIFLGLVAFTGL*LVFGFGAELICNSIGFVYPGTWL*RLWSHRRRMTIQNG 310
           E   G+ R  +  GL+    + ++ G GAE +CN IG  YP      + + R   T  + 
Sbjct: 49  EDATGLKREMLAYGLIGLNCVYMIIGSGAEFVCNLIGVAYPA--YVSVKAIRTEGTDDDT 106

Query: 311 LHIGWCTPVFLSWSTFPIHRRLV----SMYWLLKCIFGIWCYLP 430
           + + + T VF ++S        +     +YW+ K  F ++ YLP
Sbjct: 107 MWLIYWT-VFGAFSIIDFFAASIMSYFPIYWVAKAAFLLYLYLP 149


>AF045646-11|AAK29829.1|  205|Caenorhabditis elegans Hypothetical
           protein F56B3.6 protein.
          Length = 205

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
 Frame = +1

Query: 250 PRYMAMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDS--SSAGFHVLAVKVHLRDLVL 423
           P Y ++KA+ SP  DDDT WL YW  +A   +V++FS++  S   F+ +A    L  L L
Sbjct: 112 PTYASVKAIRSPGGDDDTVWLIYWTCFAVLYLVDFFSEAILSWFPFYYIAKACFLVYLYL 171

Query: 424 PAD*IQRVLVIYYRIIRP 477
           P    Q  ++ Y  I+ P
Sbjct: 172 PQ--TQGSVMFYETIVDP 187



 Score = 34.3 bits (75), Expect = 0.086
 Identities = 18/32 (56%), Positives = 20/32 (62%)
 Frame = +2

Query: 158 YIFLGLVAFTGL*LVFGFGAELICNSIGFVYP 253
           Y   GL+AF    LVFG  A L+CN IGF YP
Sbjct: 84  YAAFGLIAFF---LVFGSVARLLCNLIGFGYP 112


>U28412-5|AAC46595.1|  229|Caenorhabditis elegans Hypothetical
           protein T19C3.4 protein.
          Length = 229

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
 Frame = +1

Query: 250 PRYMAMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDSSSAGFHVLAVKVHLRDLV-LP 426
           P Y + KA+ +    +  KW+ YW+V+A +S +E   D   A +     ++ +  +  L 
Sbjct: 18  PAYRSYKAVRTKDTREYVKWMMYWIVFAIYSFLENLLDLVLAFWFPFYFQLKIVFIFWLL 77

Query: 427 AD*IQRVLVIYYRIIRPYYQKHHGRID 507
           +   +   ++Y + + P   +H   ID
Sbjct: 78  SPWTKGASILYRKWVHPTLNRHEKDID 104


>AC024748-4|AAF60410.1|  251|Caenorhabditis elegans Hypothetical
           protein Y110A2AR.1 protein.
          Length = 251

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
 Frame = +1

Query: 262 AMKALESPQKDDDTKWLTYWVVYACFSIVEYFSD----SSSAGFHVLAVKVHLRDLVLPA 429
           + K L+ P K    + + YW +Y  F IV++F      S    F+   +      + +P 
Sbjct: 21  SFKVLKKPTKPRLIECMHYWTIYGSFLIVDWFLSTFYVSCFIPFYDFFILTFTVLMAIPH 80

Query: 430 D*IQRVLVIYYRIIRPYYQKHHGRID 507
             I    V+Y + + P+ +K+  RID
Sbjct: 81  --IGFASVLYTKFLAPFLRKYERRID 104


>AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical
           protein F59E12.1 protein.
          Length = 811

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = +1

Query: 334 CFSIVEYFSDSSSAGFHVLAVKVHLRDLVLPAD*IQRVLVIYYRII 471
           CF +V   SD  SAG H   VK H RD     D  +  L+  YR +
Sbjct: 611 CFQLVSATSDLPSAGVHESPVKRHRRDDKAREDTTKLKLLAMYRYL 656


>AF166167-1|AAD49856.1|  732|Caenorhabditis elegans adducin-related
           protein protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 431 SAGSTRSRRCTLTASTWKPADDESEK 354
           S G+T SR CT  +   KP  DE +K
Sbjct: 693 SEGNTTSRSCTTASEEEKPTKDEKKK 718


>AF039043-5|AAK70639.1|  732|Caenorhabditis elegans Adducin protein
           1, isoform b protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 431 SAGSTRSRRCTLTASTWKPADDESEK 354
           S G+T SR CT  +   KP  DE +K
Sbjct: 693 SEGNTTSRSCTTASEEEKPTKDEKKK 718


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,192,661
Number of Sequences: 27780
Number of extensions: 395739
Number of successful extensions: 1065
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)