Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0270
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    25   0.92 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   8.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   8.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.6  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 395 TASTWKPADDESEKYSTIEKQAYTTQYVSHFVS 297
           T  TW P +   E Y ++   A   +Y SH+V+
Sbjct: 439 TNKTWLPVN---ENYKSLNLAAQKREYYSHYVA 468


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 234 ELHINSAPKPNTNYKPVN 181
           ++H    PKP T  KP +
Sbjct: 244 KVHATKPPKPQTKTKPTS 261


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 335 VFLSWSTFPIHRRLVS 382
           V LSW +F IHR   S
Sbjct: 259 VVLSWVSFWIHREATS 274


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 12/45 (26%), Positives = 18/45 (40%)
 Frame = +2

Query: 269 RLWSHRRRMTIQNGLHIGWCTPVFLSWSTFPIHRRLVSMYWLLKC 403
           RL  H R  T +      +C+  F       +HRR+ +     KC
Sbjct: 106 RLTRHYRTHTGEKPYQCEYCSKSFSVKENLSVHRRIHTKERPYKC 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,772
Number of Sequences: 438
Number of extensions: 5198
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)