Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0269
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.67 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   3.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   4.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   4.7  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   4.7  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   4.7  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   6.2  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   8.2  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 10/39 (25%), Positives = 16/39 (41%)
 Frame = -3

Query: 314 HHYMNEQHPENKHQEPAVHDVFMSFYIRGHIIKPHRTVP 198
           HH+ +   P ++H  P  H  + +    GH    H   P
Sbjct: 432 HHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHHHPHPP 470


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 317 VHHYMNEQHPENKHQE 270
           +HH M+ QHP  + Q+
Sbjct: 168 MHHQMHTQHPHMQPQQ 183


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 329 ESDLVHHYMN 300
           E DLVH+YMN
Sbjct: 528 EVDLVHNYMN 537


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 329 ESDLVHHYMN 300
           E DLVH+YMN
Sbjct: 528 EVDLVHNYMN 537


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 329 ESDLVHHYMN 300
           E DLVH+YMN
Sbjct: 154 EVDLVHNYMN 163


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +2

Query: 425 VLTGSWDGTVKMWDSRVPNCVGTYNQ 502
           + TGS+D     WD+  P      NQ
Sbjct: 124 IKTGSYDYPSPEWDTVTPEAKNLINQ 149


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -2

Query: 321 SSPPLYE*TASRKQTSRTGSS*CIYVFLYSRSHHKASQNS 202
           SSP     +AS    +RT SS   YV   +  HH   Q +
Sbjct: 67  SSPQHSGSSASTSPAARTTSSMYPYVSAAAAHHHHQQQQA 106


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -2

Query: 471 LLSHILTVPSQLPVSTALSSDANSTQRIAPLCSPRI 364
           L+SHI++    +PVS  + ++  S       C   I
Sbjct: 133 LISHIISKQLHIPVSVLMGANLASEVANEMFCETTI 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,053
Number of Sequences: 438
Number of extensions: 3320
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)