Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0269
(550 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 73 2e-13
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 71 5e-13
At1g80670.1 68414.m09466 transducin family protein / WD-40 repea... 60 1e-09
At1g69400.2 68414.m07968 transducin family protein / WD-40 repea... 53 1e-07
At1g69400.1 68414.m07969 transducin family protein / WD-40 repea... 53 1e-07
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 52 3e-07
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 51 4e-07
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea... 50 1e-06
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 45 4e-05
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf... 44 9e-05
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 44 9e-05
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 43 1e-04
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf... 42 2e-04
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 42 2e-04
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 42 2e-04
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 42 3e-04
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 42 4e-04
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 42 4e-04
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 41 6e-04
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 41 6e-04
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 41 6e-04
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 41 6e-04
At3g15610.1 68416.m01980 transducin family protein / WD-40 repea... 41 6e-04
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 41 6e-04
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 41 6e-04
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 41 6e-04
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 41 6e-04
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 40 8e-04
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 40 8e-04
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 40 0.001
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 40 0.001
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 40 0.001
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 40 0.001
At1g18830.1 68414.m02345 transducin family protein / WD-40 repea... 40 0.001
At1g15850.1 68414.m01902 transducin family protein / WD-40 repea... 40 0.001
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 39 0.003
At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4 pro... 38 0.003
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 38 0.003
At3g06880.1 68416.m00817 transducin family protein / WD-40 repea... 38 0.003
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 38 0.003
At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat fam... 38 0.004
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 38 0.004
At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3 pro... 38 0.006
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 38 0.006
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 38 0.006
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 38 0.006
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea... 37 0.008
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 37 0.008
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 37 0.008
At1g52730.2 68414.m05959 transducin family protein / WD-40 repea... 37 0.008
At1g52730.1 68414.m05958 transducin family protein / WD-40 repea... 37 0.008
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea... 37 0.010
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 37 0.010
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 37 0.010
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 37 0.010
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 36 0.013
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 36 0.013
At1g49450.1 68414.m05543 transducin family protein / WD-40 repea... 36 0.013
At1g15470.1 68414.m01860 transducin family protein / WD-40 repea... 36 0.013
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 36 0.018
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 36 0.024
At3g50390.1 68416.m05512 transducin family protein / WD-40 repea... 36 0.024
At3g18950.1 68416.m02405 transducin family protein / WD-40 repea... 36 0.024
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 36 0.024
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 36 0.024
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 36 0.024
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 36 0.024
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 36 0.024
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf... 36 0.024
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf... 36 0.024
At1g29260.1 68414.m03578 peroxisomal targeting signal type 2 rec... 36 0.024
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 35 0.031
At4g35140.1 68417.m04996 transducin family protein / WD-40 repea... 35 0.031
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro... 35 0.031
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea... 35 0.031
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 35 0.031
At5g66240.2 68418.m08345 transducin family protein / WD-40 repea... 35 0.041
At5g66240.1 68418.m08344 transducin family protein / WD-40 repea... 35 0.041
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ... 35 0.041
At4g03020.1 68417.m00410 transducin family protein / WD-40 repea... 35 0.041
At2g19430.1 68415.m02267 transducin family protein / WD-40 repea... 35 0.041
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea... 34 0.054
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea... 34 0.054
At1g47610.1 68414.m05288 transducin family protein / WD-40 repea... 34 0.054
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 34 0.054
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 34 0.072
At5g50120.1 68418.m06207 transducin family protein / WD-40 repea... 33 0.095
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 33 0.095
At1g27840.1 68414.m03412 transducin family protein / WD-40 repea... 33 0.095
At4g29380.1 68417.m04197 protein kinase family protein / WD-40 r... 33 0.13
At4g28450.1 68417.m04071 transducin family protein / WD-40 repea... 33 0.13
At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1) ide... 33 0.13
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 33 0.13
At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-rel... 33 0.13
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 33 0.17
At3g53390.1 68416.m05892 transducin family protein / WD-40 repea... 33 0.17
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 32 0.22
At4g38480.1 68417.m05438 transducin family protein / WD-40 repea... 32 0.22
At1g19750.1 68414.m02469 transducin family protein / WD-40 repea... 32 0.22
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 32 0.29
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 32 0.29
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 32 0.29
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 32 0.29
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 32 0.29
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 32 0.29
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 32 0.29
At2g26490.1 68415.m03178 transducin family protein / WD-40 repea... 32 0.29
At5g15550.2 68418.m01821 transducin family protein / WD-40 repea... 31 0.38
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea... 31 0.38
At4g34380.1 68417.m04884 transducin family protein / WD-40 repea... 31 0.38
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea... 31 0.38
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea... 31 0.38
At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 ... 31 0.38
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 31 0.51
At5g45760.2 68418.m05626 transducin family protein / WD-40 repea... 31 0.51
At5g45760.1 68418.m05625 transducin family protein / WD-40 repea... 31 0.51
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 31 0.51
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 31 0.51
At4g18905.1 68417.m02787 transducin family protein / WD-40 repea... 31 0.51
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea... 31 0.51
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea... 31 0.51
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 31 0.67
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 31 0.67
At1g24130.1 68414.m03044 transducin family protein / WD-40 repea... 30 0.89
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 30 1.2
At5g52250.1 68418.m06485 transducin family protein / WD-40 repea... 30 1.2
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 30 1.2
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 30 1.2
At1g78070.2 68414.m09098 WD-40 repeat family protein contains Pf... 30 1.2
At5g60940.2 68418.m07645 transducin family protein / WD-40 repea... 29 1.5
At5g60940.1 68418.m07644 transducin family protein / WD-40 repea... 29 1.5
At5g14530.1 68418.m01703 transducin family protein / WD-40 repea... 29 1.5
At4g35370.1 68417.m05025 transducin family protein / WD-40 repea... 29 1.5
At3g51930.1 68416.m05696 transducin family protein / WD-40 repea... 29 1.5
At2g37160.1 68415.m04559 transducin family protein / WD-40 repea... 29 1.5
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 29 2.0
At4g29860.1 68417.m04250 transducin family protein / WD-40 repea... 29 2.0
At3g51050.1 68416.m05590 FG-GAP repeat-containing protein 29 2.0
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 29 2.0
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 29 2.0
At5g59940.1 68418.m07516 DC1 domain-containing protein / UV-B li... 29 2.7
At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5 ... 29 2.7
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel... 29 2.7
At4g00090.1 68417.m00009 transducin family protein / WD-40 repea... 29 2.7
At3g45620.1 68416.m04927 transducin family protein / WD-40 repea... 29 2.7
At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochro... 29 2.7
At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochro... 29 2.7
At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4 ... 28 3.6
At5g58230.1 68418.m07290 WD-40 repeat protein (MSI1) contains 6 ... 28 3.6
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 28 4.7
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica... 28 4.7
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica... 28 4.7
At3g13290.1 68416.m01673 transducin family protein / WD-40 repea... 28 4.7
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea... 28 4.7
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea... 28 4.7
At3g13300.2 68416.m01675 transducin family protein / WD-40 repea... 27 6.2
At3g13300.1 68416.m01674 transducin family protein / WD-40 repea... 27 6.2
At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family pr... 27 6.2
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 27 6.2
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 27 6.2
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 27 6.2
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 27 6.2
At5g01400.1 68418.m00053 expressed protein contains low similari... 27 8.3
At4g15215.1 68417.m02332 ABC transporter family protein similar ... 27 8.3
At3g52190.1 68416.m05731 transducin family protein / WD-40 repea... 27 8.3
At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50... 27 8.3
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 72.5 bits (170), Expect = 2e-13
Identities = 39/93 (41%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Frame = +2
Query: 257 HELPVLDVCFRDAVHSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEFASELNAVLTG 436
H VLD CF D +S G D ++ N E ILG H A+RCVE++ V+TG
Sbjct: 57 HGGAVLDCCFHDDFSGFSVGADYKVRRIVFNVGKEDILGTHDKAVRCVEYSYAAGQVITG 116
Query: 437 SWDGTVKMWDSRVPN-----CVGTYNQGNNGYT 520
SWD TVK WD R + VGTY Q Y+
Sbjct: 117 SWDKTVKCWDPRGASGPERTQVGTYLQPERVYS 149
Score = 44.4 bits (100), Expect = 5e-05
Identities = 21/47 (44%), Positives = 34/47 (72%)
Frame = +3
Query: 117 KLKSLPEDAISSVKFAPKSNQYLLVSSWDCSVRLYDVTANIERHKYI 257
+L + P D IS+++F+ S+ +LLVSSWD VRLYDV+ N + +++
Sbjct: 11 ELSNPPSDGISNLRFSNNSD-HLLVSSWDKRVRLYDVSTNSLKGEFL 56
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 70.9 bits (166), Expect = 5e-13
Identities = 31/72 (43%), Positives = 41/72 (56%)
Frame = +2
Query: 257 HELPVLDVCFRDAVHSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEFASELNAVLTG 436
H VLD CF D +S D ++ D NA E +LG H+ +RCVE++ V+TG
Sbjct: 56 HGGAVLDCCFHDDSSGFSVCADTKVRRIDFNAGKEDVLGTHEKPVRCVEYSYAAGQVITG 115
Query: 437 SWDGTVKMWDSR 472
SWD T+K WD R
Sbjct: 116 SWDKTIKCWDPR 127
Score = 44.8 bits (101), Expect = 4e-05
Identities = 21/46 (45%), Positives = 33/46 (71%)
Frame = +3
Query: 117 KLKSLPEDAISSVKFAPKSNQYLLVSSWDCSVRLYDVTANIERHKY 254
+L + P D IS+++F+ S+ +LLVSSWD SVRLYD ++ R ++
Sbjct: 10 ELSNPPSDGISNLRFSNNSD-HLLVSSWDKSVRLYDANGDLMRGEF 54
>At1g80670.1 68414.m09466 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400) (1
weak); similar to Hypothetical RAE1-like
protein.(SP:Q38942) [Arabidopsis thaliana]; similar to
mRNA-associated protein mrnp 41 ((mRNA export protein)
(GB:AAC28126) (GI:1903456)(RAE1) (MRNP41) (SP:P78406)
[Homo sapiens]
Length = 349
Score = 59.7 bits (138), Expect = 1e-09
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Frame = +2
Query: 242 KT*IHHELPVLDVCFRD-AVHSYSGGLDQTLKMYDLNASTETI-LGEHKGAIRCVEFASE 415
K I H+ PVL ++D +SGG D+ KM+ L + + + + H+G I + +
Sbjct: 66 KASISHDQPVLCSAWKDDGTTVFSGGCDKQAKMWPLLSGGQPVTVAMHEGPIAAMAWIPG 125
Query: 416 LNAVLTGSWDGTVKMWDSRVPNCVGTYNQGNNGYT 520
+N + TGSWD T+K WD+R N V T + YT
Sbjct: 126 MNLLATGSWDKTLKYWDTRQQNPVHTQQLPDKCYT 160
Score = 33.5 bits (73), Expect = 0.095
Identities = 13/39 (33%), Positives = 28/39 (71%)
Frame = +3
Query: 114 FKLKSLPEDAISSVKFAPKSNQYLLVSSWDCSVRLYDVT 230
+++ P D+ISS+ F+P+++ L+ +SWD VR ++++
Sbjct: 18 YEVTPSPADSISSLSFSPRAD-ILVATSWDNQVRCWEIS 55
>At1g69400.2 68414.m07968 transducin family protein / WD-40 repeat
family protein similar to mitotic checkpoint protein
(GI:9294423) {Arabidopsis thaliana}; similar to mitotic
checkpoint protein (BUB3) (SP:O43684) (Homo sapiens)
Length = 272
Score = 53.2 bits (122), Expect = 1e-07
Identities = 22/74 (29%), Positives = 40/74 (54%)
Frame = +2
Query: 251 IHHELPVLDVCFRDAVHSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEFASELNAVL 430
++ + +LD CF + S++ G D ++ YDLNA T +G H + ++ E V+
Sbjct: 51 LNSQAALLDCCFENESTSFTSGSDGFIRRYDLNAGTVDTIGRHDDISTSIVYSYEKGEVI 110
Query: 431 TGSWDGTVKMWDSR 472
+ +D +K WD+R
Sbjct: 111 STGFDEKIKFWDTR 124
Score = 43.2 bits (97), Expect = 1e-04
Identities = 19/34 (55%), Positives = 28/34 (82%)
Frame = +3
Query: 135 EDAISSVKFAPKSNQYLLVSSWDCSVRLYDVTAN 236
EDA+S ++F+P+SN LLV+SWD +RLYDV ++
Sbjct: 13 EDAVSRLRFSPQSNN-LLVASWDSYLRLYDVESS 45
>At1g69400.1 68414.m07969 transducin family protein / WD-40 repeat
family protein similar to mitotic checkpoint protein
(GI:9294423) {Arabidopsis thaliana}; similar to mitotic
checkpoint protein (BUB3) (SP:O43684) (Homo sapiens)
Length = 314
Score = 53.2 bits (122), Expect = 1e-07
Identities = 22/74 (29%), Positives = 40/74 (54%)
Frame = +2
Query: 251 IHHELPVLDVCFRDAVHSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEFASELNAVL 430
++ + +LD CF + S++ G D ++ YDLNA T +G H + ++ E V+
Sbjct: 51 LNSQAALLDCCFENESTSFTSGSDGFIRRYDLNAGTVDTIGRHDDISTSIVYSYEKGEVI 110
Query: 431 TGSWDGTVKMWDSR 472
+ +D +K WD+R
Sbjct: 111 STGFDEKIKFWDTR 124
Score = 43.2 bits (97), Expect = 1e-04
Identities = 19/34 (55%), Positives = 28/34 (82%)
Frame = +3
Query: 135 EDAISSVKFAPKSNQYLLVSSWDCSVRLYDVTAN 236
EDA+S ++F+P+SN LLV+SWD +RLYDV ++
Sbjct: 13 EDAVSRLRFSPQSNN-LLVASWDSYLRLYDVESS 45
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 52.0 bits (119), Expect = 3e-07
Identities = 23/64 (35%), Positives = 38/64 (59%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCV 487
+GG+D+ L ++DL ST + EH+ + + + + TG +GTV +WDS + NCV
Sbjct: 304 TGGMDKKLIIWDLQHSTPRFICEHEEGVTSLTWIGTSKYLATGCANGTVSIWDSLLGNCV 363
Query: 488 GTYN 499
TY+
Sbjct: 364 HTYH 367
Score = 30.3 bits (65), Expect = 0.89
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +2
Query: 260 ELPVLDVCFRDAVHSYSGGLDQTLKMYDL-NASTETILGEHKGAIRCVEFASELNAVLTG 436
EL L DA +GG D ++ + N L HK ++ C+ F+ + + +G
Sbjct: 72 ELYALACSPTDATLVATGGGDDKAFLWKIGNGDWAAELPGHKDSVSCLAFSYDGQLLASG 131
Query: 437 SWDGTVKMWDS 469
DG V+++D+
Sbjct: 132 GLDGVVQIFDA 142
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 51.2 bits (117), Expect = 4e-07
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Frame = +2
Query: 257 HELPVLDVCFR-DAVHSYSGGLDQTLKMYDLNAST--ETILGEHKGAIRCVEFASELNAV 427
HE + DV F DA S D+TLK++D+ + +T++G H CV F + N +
Sbjct: 70 HENGISDVAFSSDARFIVSASDDKTLKLWDVETGSLIKTLIG-HTNYAFCVNFNPQSNMI 128
Query: 428 LTGSWDGTVKMWDSRVPNCV 487
++GS+D TV++WD C+
Sbjct: 129 VSGSFDETVRIWDVTTGKCL 148
Score = 43.6 bits (98), Expect = 9e-05
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNAST-ETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNC 484
SG D+T++++D+ +L H + V+F + + +++ S+DG ++WDS +C
Sbjct: 130 SGSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDSGTGHC 189
Query: 485 VGTYNQGNN 511
V T N
Sbjct: 190 VKTLIDDEN 198
Score = 31.1 bits (67), Expect = 0.51
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +2
Query: 257 HELPVLDVCF-RDAVHSYSGGLDQTLKMYDLNAS--TETILGEHKGAIRCVEFASELNAV 427
H PV V F RD S D +++D +T++ + + V F+ +
Sbjct: 154 HSDPVTAVDFNRDGSLIVSSSYDGLCRIWDSGTGHCVKTLIDDENPPVSFVRFSPNGKFI 213
Query: 428 LTGSWDGTVKMWDSRVPNCVGTY 496
L G+ D T+++W+ + TY
Sbjct: 214 LVGTLDNTLRLWNISSAKFLKTY 236
>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 5 WD-40 repeats (PF00400); similar to beta
transducin-like protein HET-E2C*4
(GP:17225206)[Podospora anserina]
Length = 530
Score = 50.0 bits (114), Expect = 1e-06
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Frame = +2
Query: 287 RDAVHSYSGGLDQTLKMYDLNAST--ETILGEHKGAIRCVEFASELNAVL-TGSWDGTVK 457
+D +H SGG D +K +D+ +T +LG HK +RC + + +++L TGS+D TVK
Sbjct: 146 QDKLHLVSGGDDGVVKYWDVAGATVISDLLG-HKDYVRCGDCSPVNDSMLVTGSYDHTVK 204
Query: 458 MWDSRV--PNCVGTYNQG 505
+WD+RV N + N G
Sbjct: 205 VWDARVHTSNWIAEINHG 222
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 44.8 bits (101), Expect = 4e-05
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTETILGE---HKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVP 478
SGGLD +K++DL A +L E H+G IR ++F + TGS D TVK WD
Sbjct: 108 SGGLDNVVKVWDLTAGK--LLHEFKCHEGPIRSLDFHPLEFLLATGSADRTVKFWDLETF 165
Query: 479 NCVGT 493
+GT
Sbjct: 166 ELIGT 170
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +2
Query: 257 HELPVLDVCFR-DAVHSYSGGLDQTLKMYDLNASTET-ILGEHKGAIRCVEFASELNAVL 430
H PV V F + V +G +K++DL S H+ VEF +
Sbjct: 6 HTSPVDSVAFNSEEVLVLAGASSGVIKLWDLEESKMVRAFTGHRSNCSAVEFHPFGEFLA 65
Query: 431 TGSWDGTVKMWDSRVPNCVGTYNQGNNG 514
+GS D +++WD+R C+ TY G
Sbjct: 66 SGSSDTNLRVWDTRKKGCIQTYKGHTRG 93
Score = 32.7 bits (71), Expect = 0.17
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNAS--TETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
SG D L+++D +T G +G I +EF+ + V++G D VK+WD
Sbjct: 66 SGSSDTNLRVWDTRKKGCIQTYKGHTRG-ISTIEFSPDGRWVVSGGLDNVVKVWD 119
>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 825
Score = 43.6 bits (98), Expect = 9e-05
Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +2
Query: 251 IHHELPVLDVCFRDAVHSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEF-ASELNAV 427
+ H VLD+ + + H S +D+T++++DL++ T + H + C++F + N
Sbjct: 465 VGHLDDVLDLSWSKSQHLLSSSMDKTVRLWDLSSKTCLKVFSHSDYVTCIQFNPVDDNYF 524
Query: 428 LTGSWDGTVKMW 463
++GS D V++W
Sbjct: 525 ISGSLDAKVRIW 536
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 43.6 bits (98), Expect = 9e-05
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Frame = +2
Query: 257 HELPVLDVCFR-DAVHSYSGGLDQTLKMYDLNASTET--ILGEHKGAIRCVEFASELNAV 427
H + D+ + D+ ++ S D TL+++D + E +L H + CV F N +
Sbjct: 84 HSSGISDLAWSSDSHYTCSASDDCTLRIWDARSPYECLKVLRGHTNFVFCVNFNPPSNLI 143
Query: 428 LTGSWDGTVKMWDSRVPNCV 487
++GS+D T+++W+ + CV
Sbjct: 144 VSGSFDETIRIWEVKTGKCV 163
Score = 37.5 bits (83), Expect = 0.006
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNAST-ETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNC 484
SG D+T++++++ ++ H I V F + + +++ S DG+ K+WD++ C
Sbjct: 145 SGSFDETIRIWEVKTGKCVRMIKAHSMPISSVHFNRDGSLIVSASHDGSCKIWDAKEGTC 204
Query: 485 VGT 493
+ T
Sbjct: 205 LKT 207
Score = 31.9 bits (69), Expect = 0.29
Identities = 17/69 (24%), Positives = 35/69 (50%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCV 487
+ G + +Y +T+ G H AI CV+F+++ N + + S D T+ +W + + +
Sbjct: 20 NAGTSGNVPIYKPYRHLKTLEG-HTAAISCVKFSNDGNLLASASVDKTMILWSATNYSLI 78
Query: 488 GTYNQGNNG 514
Y ++G
Sbjct: 79 HRYEGHSSG 87
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 43.2 bits (97), Expect = 1e-04
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTETILGE---HKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVP 478
SGGLD +K++DL A +L E H+G IR ++F + TGS D TVK WD
Sbjct: 159 SGGLDNVVKVWDLTAGK--LLHEFKFHEGPIRSLDFHPLEFLLATGSADRTVKFWDLETF 216
Query: 479 NCVGT 493
+G+
Sbjct: 217 ELIGS 221
Score = 36.3 bits (80), Expect = 0.013
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Frame = +2
Query: 257 HELPVLDVCFRDA-VHSYSGGLDQTLKMYDLN-ASTETILGEHKGAIRCVEFASELNAVL 430
H V V F A V +G +K++D+ A H+ VEF +
Sbjct: 57 HTSAVDSVAFDSAEVLVLAGASSGVIKLWDVEEAKMVRAFTGHRSNCSAVEFHPFGEFLA 116
Query: 431 TGSWDGTVKMWDSRVPNCVGTYNQGNNG 514
+GS D +K+WD R C+ TY + G
Sbjct: 117 SGSSDANLKIWDIRKKGCIQTYKGHSRG 144
>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 709
Score = 42.3 bits (95), Expect = 2e-04
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Frame = +2
Query: 257 HELPVLDVCFRDAVHSYSGGLDQTLKMYDLNASTETI-LGEHKGAIRCVEF-ASELNAVL 430
H +LD+ + + S +D+T++++ + +S E I + HK + CV F + N +
Sbjct: 362 HTGEILDLSWSEKGFLLSSSVDETVRLWRVGSSDECIRVFSHKSFVTCVAFNPVDDNYFI 421
Query: 431 TGSWDGTVKMWD 466
+GS DG V++WD
Sbjct: 422 SGSIDGKVRIWD 433
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +2
Query: 290 DAVHSYSGGLDQTLKMYDLNAST--ETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMW 463
D + +G D T K++D + +T+ G H + V F EL ++TGS DGTV++W
Sbjct: 198 DKPYLITGSDDHTAKVWDYQTKSCVQTLEG-HTHNVSAVSFHPELPIIITGSEDGTVRIW 256
Query: 464 DSRVPNCVGTYNQG 505
+ T N G
Sbjct: 257 HATTYRLENTLNYG 270
Score = 32.7 bits (71), Expect = 0.17
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Frame = +2
Query: 179 VLAGIFMGLFCEAL*CDREYRKT*IHHELPVLDVCFRDAVHSYSGGLDQT-LKMYDLNAS 355
+LA ++ G C + K+ ELPV F G D +++Y+ N
Sbjct: 30 ILASLYSGTLCIWNYQTQTMVKSFDVTELPVRSAKFIARKQWVVAGADDMFIRVYNYNTM 89
Query: 356 TETILGE-HKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
+ + E H IRCV L VL+ S D +K+WD
Sbjct: 90 DKIKVFEAHADYIRCVAVHPTLPYVLSSSDDMLIKLWD 127
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 42.3 bits (95), Expect = 2e-04
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Frame = +2
Query: 257 HELPVLDVCF-RDAVHSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVE---FASELNA 424
H V + F RD S DQT +++ L + +L E +G V F S+ +
Sbjct: 304 HSQGVTSLSFSRDGSQLLSTSFDQTARIHGLKSGK--LLKEFRGHTSYVNHAIFTSDGSR 361
Query: 425 VLTGSWDGTVKMWDSRVPNCVGTY 496
++T S D TVK+WDS+ +C+ T+
Sbjct: 362 IITASSDCTVKVWDSKTTDCLQTF 385
Score = 37.9 bits (84), Expect = 0.004
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +2
Query: 341 DLNASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCVGTYNQGNNGYT 520
DL + H + C++F+ + + +GS DG +K+W R C+ ++ + G T
Sbjct: 250 DLQYQADESFMMHDDPVLCIDFSRDSEMLASGSQDGKIKIWRIRTGVCIRRFDAHSQGVT 309
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 41.9 bits (94), Expect = 3e-04
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +2
Query: 299 HSYSGGLDQTLKMYDLNA-STETIL--GEHKGAIRCVEFASELNAVLTGSWDGTVKMWDS 469
H + + ++++D+N+ S + ++ H + V F + + +GS DGTVK+WD
Sbjct: 48 HYLAAACNPHIRLFDVNSNSPQPVMTYDSHTNNVMAVGFQCDAKWMYSGSEDGTVKIWDL 107
Query: 470 RVPNCVGTY 496
R P C Y
Sbjct: 108 RAPGCQKEY 116
Score = 40.3 bits (90), Expect = 8e-04
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +2
Query: 257 HELPVLDVCFR-DAVHSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEFASELNAVLT 433
H V+ V F+ DA YSG D T+K++DL A E A+ V +++
Sbjct: 77 HTNNVMAVGFQCDAKWMYSGSEDGTVKIWDLRAPGCQKEYESVAAVNTVVLHPNQTELIS 136
Query: 434 GSWDGTVKMWDSRVPNC 484
G +G +++WD R +C
Sbjct: 137 GDQNGNIRVWDLRANSC 153
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 41.5 bits (93), Expect = 4e-04
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTE-TILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNC 484
SGG D +K++DL A T H+G I+ ++F + TGS D TVK WD
Sbjct: 160 SGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFWDLETFEL 219
Query: 485 VGT 493
+G+
Sbjct: 220 IGS 222
Score = 36.3 bits (80), Expect = 0.013
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNAS--TETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPN 481
+G T+K++DL + T+ G I V+F +GS D +K+WD R
Sbjct: 76 AGAASGTIKLWDLEEAKIVRTLTGHRSNCIS-VDFHPFGEFFASGSLDTNLKIWDIRKKG 134
Query: 482 CVGTYNQGNNG 514
C+ TY G
Sbjct: 135 CIHTYKGHTRG 145
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTETI-LGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNC 484
+GG D + ++ + + L H I V F + V G+ GT+K+WD
Sbjct: 34 TGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEVLVAAGAASGTIKLWDLEEAKI 93
Query: 485 VGT 493
V T
Sbjct: 94 VRT 96
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 41.5 bits (93), Expect = 4e-04
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTE-TILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNC 484
SGG D +K++DL A T H+G I+ ++F + TGS D TVK WD
Sbjct: 160 SGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFWDLETFEL 219
Query: 485 VGT 493
+G+
Sbjct: 220 IGS 222
Score = 36.3 bits (80), Expect = 0.013
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNAS--TETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPN 481
+G T+K++DL + T+ G I V+F +GS D +K+WD R
Sbjct: 76 AGAASGTIKLWDLEEAKIVRTLTGHRSNCIS-VDFHPFGEFFASGSLDTNLKIWDIRKKG 134
Query: 482 CVGTYNQGNNG 514
C+ TY G
Sbjct: 135 CIHTYKGHTRG 145
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTETI-LGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNC 484
+GG D + ++ + + L H I V F + V G+ GT+K+WD
Sbjct: 34 TGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEVLVAAGAASGTIKLWDLEEAKI 93
Query: 485 VGT 493
V T
Sbjct: 94 VRT 96
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 40.7 bits (91), Expect = 6e-04
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Frame = +2
Query: 257 HELPVLDVCFR--DAVHSYSGGLDQTLKMYDLNASTETILGE---HKGAIRCVEFASELN 421
H +PV + F D +SG D + M+D A +T+LG H + V+ + +
Sbjct: 199 HNMPVRSLVFSPVDPRVLFSGSDDGHVNMHD--AEGKTLLGSMSGHTSWVLSVDASPDGG 256
Query: 422 AVLTGSWDGTVKMWDSRVPNCVGTYNQGNN 511
A+ TGS D TV++WD ++ + T + N+
Sbjct: 257 AIATGSSDRTVRLWDLKMRAAIQTMSNHND 286
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 40.7 bits (91), Expect = 6e-04
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +2
Query: 290 DAVHSYSGGLDQTLKMYDLNA-STETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
D + +G D T K++D S L H + V F EL ++TGS DGTV++W
Sbjct: 198 DKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWH 257
Query: 467 SRVPNCVGTYNQG 505
+ T N G
Sbjct: 258 ATTYRLENTLNYG 270
Score = 34.3 bits (75), Expect = 0.054
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Frame = +2
Query: 179 VLAGIFMGLFCEAL*CDREYRKT*IHHELPVLDVCFRDAVHSYSGGLDQT-LKMYDLNAS 355
+LA ++ G C + K+ ELPV F G D +++Y+ N
Sbjct: 30 ILASLYSGTVCIWNYQTQTITKSFEVTELPVRSAKFIPRKQWVVAGADDMYIRVYNYNTM 89
Query: 356 TETILGE-HKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
+ + E H IRCV L VL+ S D +K+WD
Sbjct: 90 DKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 40.7 bits (91), Expect = 6e-04
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +2
Query: 290 DAVHSYSGGLDQTLKMYDLNA-STETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
D + +G D T K++D S L H + V F EL ++TGS DGTV++W
Sbjct: 198 DKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWH 257
Query: 467 SRVPNCVGTYNQG 505
+ T N G
Sbjct: 258 ATTYRLENTLNYG 270
Score = 34.3 bits (75), Expect = 0.054
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Frame = +2
Query: 179 VLAGIFMGLFCEAL*CDREYRKT*IHHELPVLDVCFRDAVHSYSGGLDQT-LKMYDLNAS 355
+LA ++ G C + K+ ELPV F G D +++Y+ N
Sbjct: 30 ILASLYSGTVCIWNYQTQTITKSFEVTELPVRSAKFIPRKQWVVAGADDMYIRVYNYNTM 89
Query: 356 TETILGE-HKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
+ + E H IRCV L VL+ S D +K+WD
Sbjct: 90 DKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 40.7 bits (91), Expect = 6e-04
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +2
Query: 290 DAVHSYSGGLDQTLKMYDLNA-STETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
D + +G D T K++D S L H + V F EL ++TGS DGTV++W
Sbjct: 198 DKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWH 257
Query: 467 SRVPNCVGTYNQG 505
+ T N G
Sbjct: 258 ATTYRLENTLNYG 270
Score = 34.3 bits (75), Expect = 0.054
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Frame = +2
Query: 179 VLAGIFMGLFCEAL*CDREYRKT*IHHELPVLDVCFRDAVHSYSGGLDQT-LKMYDLNAS 355
+LA ++ G C + K+ ELPV F G D +++Y+ N
Sbjct: 30 ILASLYSGTVCIWNYQTQTITKSFEVTELPVRSAKFIPRKQWVVAGADDMYIRVYNYNTM 89
Query: 356 TETILGE-HKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
+ + E H IRCV L VL+ S D +K+WD
Sbjct: 90 DKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127
>At3g15610.1 68416.m01980 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to serine/threonine kinase receptor associated
protein GB:NP_035629 (SP:Q9Z1Z2) [Mus musculus];
UNR-interacting protein GB:NP_009109 [Homo sapiens]
Length = 341
Score = 40.7 bits (91), Expect = 6e-04
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTETILGE-HKGAIRCVEFASELNAVLTGSWDGTVKMWDS 469
+GG D ++++D + E + H G + CV FA + +GS DGT+++W +
Sbjct: 245 AGGEDMWVRLFDFHTGKEIGCNKGHHGPVHCVRFAPTGESYASGSEDGTIRIWQT 299
Score = 33.9 bits (74), Expect = 0.072
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Frame = +2
Query: 287 RDAVHSYSGGLDQTLKMYDLNA--STETILGEHKGAIRCVEFASELNAVLTGSWD-GTVK 457
+D + +GG ++ L+++DLN + T + + G+IR + + +L+ D G V+
Sbjct: 112 QDTKYLITGGFEKILRVFDLNRLDAPPTEIDKSPGSIRTLTWLHGDQTILSSCTDIGGVR 171
Query: 458 MWDSRVPNCVGT 493
+WD R V T
Sbjct: 172 LWDVRSGKIVQT 183
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +2
Query: 257 HELPVLDVCF-RDAVHSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEFASELNAVLT 433
H+ V C +A+ + S D + K++D EHK +R F+ + ++T
Sbjct: 60 HKGAVWSSCLDNNALRAASASADFSAKLWDALTGDVLHSFEHKHIVRACAFSQDTKYLIT 119
Query: 434 GSWDGTVKMWD 466
G ++ ++++D
Sbjct: 120 GGFEKILRVFD 130
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 40.7 bits (91), Expect = 6e-04
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Frame = +2
Query: 257 HELPVLDVCFRDAVHSY-SGGLDQTLKM--YDLNASTETILGEHKGAIRCVEFASELNAV 427
HE PV V F ++ + SGG D +K+ Y + T+LG H IR V+F E +
Sbjct: 50 HEGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKNHRCLFTLLG-HLDYIRTVQFHHEYPWI 108
Query: 428 LTGSWDGTVKMWDSRVPNCVGTYNQGNNGY 517
++ S D T+++W+ + CV G+N Y
Sbjct: 109 VSASDDQTIRIWNWQSRTCVSVLT-GHNHY 137
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 374 EHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCVGT 493
EH+G +R V F + ++G D +K+W+ + C+ T
Sbjct: 49 EHEGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKNHRCLFT 88
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 40.7 bits (91), Expect = 6e-04
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +2
Query: 290 DAVHSYSGGLDQTLKMYDLNAST--ETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMW 463
D + +G D T K++D + +T+ G H + V F EL ++TGS DGTV++W
Sbjct: 198 DKPYLITGSDDHTAKVWDYQTKSCVQTLEG-HTHNVSAVCFHPELPIIITGSEDGTVRIW 256
Query: 464 DSRVPNCVGTYNQG 505
+ T N G
Sbjct: 257 HATTYRLENTLNYG 270
Score = 33.9 bits (74), Expect = 0.072
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Frame = +2
Query: 179 VLAGIFMGLFCEAL*CDREYRKT*IHHELPVLDVCFRDAVHSYSGGLDQT-LKMYDLNAS 355
+LA ++ G C + K+ ELPV F G D +++Y+ N
Sbjct: 30 ILASLYSGTLCIWNYQTQVMAKSFEVTELPVRSAKFVARKQWVVAGADDMYIRVYNYNTM 89
Query: 356 TETILGE-HKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
+ + E H IRCV L VL+ S D +K+WD
Sbjct: 90 DKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 40.7 bits (91), Expect = 6e-04
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNAST--ETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPN 481
SG D ++ ++D + E + G H + CV+ S VLT + DGTVKMWD R
Sbjct: 914 SGSDDLSVIVWDKQTTQLLEELKG-HDSQVSCVKMLSG-ERVLTAAHDGTVKMWDVRTDM 971
Query: 482 CVGT 493
CV T
Sbjct: 972 CVAT 975
Score = 36.3 bits (80), Expect = 0.013
Identities = 15/55 (27%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = +2
Query: 308 SGGLDQTLKMYDLN-ASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDS 469
+G D T +++ ++ S + +L H G ++ VE++ ++TGS DG ++ W++
Sbjct: 1037 TGSDDWTARVWSVSRGSCDAVLACHAGPVQSVEYSPFDKGIITGSADGLLRFWEN 1091
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 40.7 bits (91), Expect = 6e-04
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Frame = +2
Query: 251 IHHELPVLDVCFR-DAVHSYSGGLDQTLKMYDLNASTETILGE---HKGAIRCVEFASE- 415
+ H VL V F D S D+T+K+++ + + E HK + CV F+
Sbjct: 102 VGHTKDVLSVAFSTDNRQIVSASRDRTIKLWNTLGECKYTISEADGHKEWVSCVRFSPNT 161
Query: 416 -LNAVLTGSWDGTVKMWDSRVPNC-VGTYNQGNNGY 517
+ +++ SWD TVK+W+ + NC + G++GY
Sbjct: 162 LVPTIVSASWDKTVKVWN--LQNCKLRNTLAGHSGY 195
Score = 32.3 bits (70), Expect = 0.22
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 308 SGGLDQTLKMYDL-NASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
S D+T+K+++L N L H G + V + + + +G DG + +WD
Sbjct: 168 SASWDKTVKVWNLQNCKLRNTLAGHSGYLNTVAVSPDGSLCASGGKDGVILLWD 221
Score = 31.1 bits (67), Expect = 0.51
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 377 HKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
H ++ V +S+ L+GSWDG +++WD
Sbjct: 62 HSHFVQDVVLSSDGQFALSGSWDGELRLWD 91
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 40.3 bits (90), Expect = 8e-04
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Frame = +2
Query: 251 IHHELPVLDVCFR-DAVHSYSGGLDQTLKMYDLNASTETILGE---HKGAIRCVEFASE- 415
+ H VL V F D S D+T+K+++ + + E HK + CV F+
Sbjct: 102 VGHTKDVLSVAFSTDNRQIVSASRDRTIKLWNTLGECKYTISEGDGHKEWVSCVRFSPNT 161
Query: 416 -LNAVLTGSWDGTVKMWDSRVPNC-VGTYNQGNNGY 517
+ +++ SWD TVK+W+ + NC + G++GY
Sbjct: 162 LVPTIVSASWDKTVKVWN--LQNCKLRNSLVGHSGY 195
Score = 30.7 bits (66), Expect = 0.67
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 377 HKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
H + V +S+ L+GSWDG +++WD
Sbjct: 62 HSHFVEDVVLSSDGQFALSGSWDGELRLWD 91
Score = 30.7 bits (66), Expect = 0.67
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 308 SGGLDQTLKMYDL-NASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
S D+T+K+++L N L H G + V + + + +G DG + +WD
Sbjct: 168 SASWDKTVKVWNLQNCKLRNSLVGHSGYLNTVAVSPDGSLCASGGKDGVILLWD 221
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 40.3 bits (90), Expect = 8e-04
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Frame = +2
Query: 257 HELPVLDVCFRDAVHSY-SGGLDQTLKM--YDLNASTETILGEHKGAIRCVEFASELNAV 427
HE PV V F ++ + SGG D +K+ Y + T+LG H IR V+F E +
Sbjct: 50 HEGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKTHRCLFTLLG-HLDYIRTVQFHHENPWI 108
Query: 428 LTGSWDGTVKMWDSRVPNCVGTYNQGNNGY 517
++ S D T+++W+ + C+ G+N Y
Sbjct: 109 VSASDDQTIRIWNWQSRTCISVLT-GHNHY 137
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 374 EHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCVGT 493
EH+G +R V F + ++G D +K+W+ + C+ T
Sbjct: 49 EHEGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKTHRCLFT 88
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTETILGE---HKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVP 478
SGG D +K++DL A +L E H+G I+ ++F + TGS D TVK WD
Sbjct: 253 SGGEDNVVKVWDLTAGK--LLHEFKSHEGKIQSLDFHPHEFLLATGSADKTVKFWDLETF 310
Query: 479 NCVGT 493
+G+
Sbjct: 311 ELIGS 315
Score = 35.9 bits (79), Expect = 0.018
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +2
Query: 308 SGGLDQTLKMYDLN-ASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNC 484
+G T+K++DL A L H+ V F +GS D +K+WD R C
Sbjct: 169 AGAASGTIKLWDLEEAKVVRTLTGHRSNCVSVNFHPFGEFFASGSLDTNLKIWDIRKKGC 228
Query: 485 VGTYNQGNNG 514
+ TY G
Sbjct: 229 IHTYKGHTRG 238
Score = 30.3 bits (65), Expect = 0.89
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTETI-LGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNC 484
+GG D + ++ + + L H I V F + V G+ GT+K+WD
Sbjct: 127 TGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEGLVAAGAASGTIKLWDLEEAKV 186
Query: 485 VGT 493
V T
Sbjct: 187 VRT 189
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTE---TILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVP 478
S G+D +K++D+ S + T +G H A+R + F+++ + LT +D +K WD+
Sbjct: 300 SAGMDCKVKIWDVYNSGKCMRTYMG-HAKAVRDICFSNDGSKFLTAGYDKNIKYWDTETG 358
Query: 479 NCVGTYNQGNNGY 517
+ T++ G Y
Sbjct: 359 QVISTFSTGKIPY 371
Score = 31.9 bits (69), Expect = 0.29
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 144 ISSVKFAPKSNQYLLVSSWDCSVRLYDV 227
+S+++F PK LL + DC V+++DV
Sbjct: 285 VSAIRFFPKQGHLLLSAGMDCKVKIWDV 312
Score = 31.1 bits (67), Expect = 0.51
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTETI-LGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVP 478
+G D+ + +D+N T +H GA+ + F +T S D ++++W+ +P
Sbjct: 387 AGMSDKKIVQWDINTGEVTQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIP 444
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +2
Query: 257 HELPVLDVCFRDAVHSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEF-ASELNAVLT 433
H VLD+ + + H S +D+T+++++L++ T + H + C++F + ++
Sbjct: 512 HVDDVLDLAWSKSQHLLSSSMDKTVRLWNLSSQTCLKVFSHSDYVTCIQFNPVDDRYFIS 571
Query: 434 GSWDGTVKMW 463
GS D V++W
Sbjct: 572 GSLDAKVRVW 581
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 39.5 bits (88), Expect = 0.001
Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +2
Query: 269 VLDVCFRDAVHSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEFAS-ELNAVLTGSWD 445
+LD+ + + S +D+T++++D+ T L H + C++F+ + N L+GS D
Sbjct: 509 ILDLSWSKSQLLLSSSMDKTVRLWDIETKTCLKLFAHNDYVTCIQFSPVDENYFLSGSLD 568
Query: 446 GTVKMW 463
+++W
Sbjct: 569 AKIRIW 574
>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
family protein similar to Sec31p (GI:13928450) {Oryza
sativa}
Length = 969
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 368 LGEHKGAIRCVEF-ASELNAVLTGSWDGTVKMWDSRVPNCVGTYNQGNNGYTQ 523
L +HKG +R +EF N + +G+ DGTV +WD P+ Y +G Y Q
Sbjct: 111 LSKHKGPVRGLEFNVKSPNQLASGADDGTVCIWDLANPSKPSHYLKGTGSYMQ 163
>At1g15850.1 68414.m01902 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
mRNA-associated protein mrnp 41 (SP:P78406) [Homo
sapiens]; similar to mitotic checkpoint protein
GI:9294423 from [Arabidopsis thaliana]
Length = 140
Score = 39.5 bits (88), Expect = 0.001
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 242 KT*IHHELPVLDVCFRD-AVHSYSGGLDQTLKMYDLNASTE-TILGEHKGAIRCVEFASE 415
K + H+ PVL ++D ++GG D+ KM+ L + + + + H + +
Sbjct: 67 KVSMSHDQPVLCSAWKDDGTTVFTGGCDKQAKMWPLLSGAQPSTVAMHDAPFNQIAWIPG 126
Query: 416 LNAVLTGSWDGTVK 457
+N ++TGSWD T+K
Sbjct: 127 MNLLVTGSWDKTLK 140
Score = 38.3 bits (85), Expect = 0.003
Identities = 15/31 (48%), Positives = 25/31 (80%)
Frame = +3
Query: 138 DAISSVKFAPKSNQYLLVSSWDCSVRLYDVT 230
D+ISS+ F+PK++ L+ +SWDC VR +++T
Sbjct: 27 DSISSLSFSPKAD-ILVATSWDCQVRCWEIT 56
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +2
Query: 299 HSYSGGLDQTLKMYDL-NASTETILGEHKGAIRCVEFASELNAVL-TGSWDGTVKMW 463
H Y+G D T+K + L + S + HK + + +N VL +GSWDGTV++W
Sbjct: 599 HVYTGSGDNTIKAWSLQDGSLLCTMSGHKSVVSTLVV---VNGVLYSGSWDGTVRLW 652
>At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4
protein (ZFWD4) contains 6 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd4 protein (GI:12057170)
[Arabidopsis thaliana]
Length = 419
Score = 38.3 bits (85), Expect = 0.003
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +2
Query: 305 YSGGLDQTLKMYDLNA-STETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMW 463
YSG +D+T+KM+DLN L +H G + + + +++ S DGT+K+W
Sbjct: 272 YSGSVDKTIKMWDLNTLQCIMTLKQHTGTVTSLLCWDK--CLISSSLDGTIKVW 323
Score = 34.3 bits (75), Expect = 0.054
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 362 TILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCVGTYNQ 502
T L H G + C ++ + +GS D T+KMWD C+ T Q
Sbjct: 252 TSLEGHSGEVTCFAVGGQM--LYSGSVDKTIKMWDLNTLQCIMTLKQ 296
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 38.3 bits (85), Expect = 0.003
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 251 IHHELPVLDVCFR-DAVHSYSGGLDQTLKMYDLN-ASTETILGEHKGAIRCVEFASELNA 424
I H VL + D + SG D T+ M+DL+ A T L H + + ++ E +
Sbjct: 538 IGHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLSTARCITPLMGHNSCVWSLSYSGEGSL 597
Query: 425 VLTGSWDGTVKMWD 466
+ +GS D TVK+WD
Sbjct: 598 LASGSADCTVKLWD 611
Score = 35.5 bits (78), Expect = 0.024
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +2
Query: 257 HELPVLDVCFRDAVHSYSG-GLDQTLKMYDLNASTETILGEHKGAIRCVEFASELNAVLT 433
H PV D F H ++ D+T +++ ++ L G + V++ N + T
Sbjct: 459 HNYPVWDAQFSPFGHYFASCSHDRTARIWSMDRIQP--LRIMAGHLSDVDWHPNCNYIAT 516
Query: 434 GSWDGTVKMWDSRVPNCV 487
GS D TV++WD + CV
Sbjct: 517 GSSDKTVRLWDVQTGECV 534
Score = 33.5 bits (73), Expect = 0.095
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNAST-ETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNC 484
+G D+T++++D+ I H+ + + + + + +G DGT+ MWD C
Sbjct: 516 TGSSDKTVRLWDVQTGECVRIFIGHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLSTARC 575
Query: 485 VGTYNQGNN 511
+ T G+N
Sbjct: 576 I-TPLMGHN 583
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 362 TILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRV 475
T+L H G + F+ + VL+ S D T+++W +++
Sbjct: 412 TLLLGHSGPVYSATFSPPGDFVLSSSADTTIRLWSTKL 449
>At3g06880.1 68416.m00817 transducin family protein / WD-40 repeat
family protein similar to PAK/PLC-interacting protein 1
(GI:4211689) {Homo sapiens}
Length = 1115
Score = 38.3 bits (85), Expect = 0.003
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Frame = +2
Query: 305 YSGGLDQTLKMYDLNASTETILG---EHKGAIRCVEFASELNAVLTGSWDGTVKMW 463
+SG D +++++++N T+L EHK + C + VL+GS D T+++W
Sbjct: 867 FSGFSDGSIRVWNVNKKIATLLWDIKEHKSTVTCFSLSETGECVLSGSADKTIRVW 922
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 38.3 bits (85), Expect = 0.003
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Frame = +2
Query: 251 IHHELPVLDVCFR-DAVHSYSGGLDQTLKMYDLNASTETILGE----HKGAIRCVEFASE 415
+ H VL V F D S D+T+K+++ + + E H+ + CV F+
Sbjct: 102 VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN 161
Query: 416 L--NAVLTGSWDGTVKMWDSRVPNC-VGTYNQGNNGY 517
+++ SWD TVK+W+ + NC + + G+ GY
Sbjct: 162 TLQPTIVSASWDKTVKVWN--LSNCKLRSTLAGHTGY 196
Score = 32.7 bits (71), Expect = 0.17
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 308 SGGLDQTLKMYDL-NASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
S D+T+K+++L N + L H G + V + + + +G DG V +WD
Sbjct: 169 SASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWD 222
Score = 30.7 bits (66), Expect = 0.67
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 377 HKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
H + V +S+ L+GSWDG +++WD
Sbjct: 62 HSHFVEDVVLSSDGQFALSGSWDGELRLWD 91
Score = 28.7 bits (61), Expect = 2.7
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +3
Query: 177 QYLLVSSWDCSVRLYDVTANIERHKYIMNCRFLMFV 284
Q+ L SWD +RL+D+ A + +++ + + ++ V
Sbjct: 76 QFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSV 111
>At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat family
protein contains G-protein beta WD-40 repeats
Length = 539
Score = 37.9 bits (84), Expect = 0.004
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +2
Query: 296 VHSYSGGLDQTLKMYDLNA----STETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMW 463
+H + LD ++DL TE L H+G I A ++ ++ +GSWD +V++W
Sbjct: 226 IHCWKS-LDGLRNLFDLTGFQKEKTEFRLWGHEGPI--TSLALDMTSIFSGSWDMSVRIW 282
Query: 464 DSRVPNCVGT 493
D CV T
Sbjct: 283 DRSSMKCVKT 292
Score = 30.3 bits (65), Expect = 0.89
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 353 STETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
S +T+ G H A+R V + V T +D V+MWD
Sbjct: 154 SIDTLYG-HTEAVRTVFLLASAKLVFTSGYDSIVRMWD 190
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 37.9 bits (84), Expect = 0.004
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTETILGE------HKGAIRCVEFASELNAVLTGSWDGTVKMWDS 469
SGG D ++++D A T +L + HK AI + A++ + LTGS D T K+WD
Sbjct: 192 SGGEDAAIRIWD--AETGKLLKQSDEEVGHKEAITSLCKAADDSHFLTGSHDKTAKLWDM 249
Query: 470 RVPNCVGTY 496
R + TY
Sbjct: 250 RTLTLIKTY 258
Score = 35.1 bits (77), Expect = 0.031
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 377 HKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCVGTYNQG 505
H GA+ C + + + + ++TGS D T K+WD + + T+ G
Sbjct: 78 HSGAVWCCDISRDSSRLITGSADQTAKLWDVKSGKELFTFKFG 120
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +2
Query: 287 RDAVHSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEFA--SELNAVLTGSWDGT 451
RD+ +G DQT K++D+ + E + R V+F+ L + T + GT
Sbjct: 89 RDSSRLITGSADQTAKLWDVKSGKELFTFKFGAPARSVDFSVGDHLAVITTDHFVGT 145
>At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3
protein (ZFWD3) contains 5 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd3 protein (GP:12057168)
{Arabidopsis thaliana}
Length = 472
Score = 37.5 bits (83), Expect = 0.006
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +2
Query: 305 YSGGLDQTLKMYDLNA-STETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMW 463
YSG +D+T+K++DLN L +H G + + + +++ S DGT+K+W
Sbjct: 326 YSGSVDKTIKVWDLNTLQCRMTLKQHIGTVTSLLCWDK--CLISSSLDGTIKLW 377
Score = 31.9 bits (69), Expect = 0.29
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 371 GEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCVGTYNQ 502
G H G + C E+ + +GS D T+K+WD C T Q
Sbjct: 309 GHHSGEVTCFVVGGEV--LYSGSVDKTIKVWDLNTLQCRMTLKQ 350
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 377 HKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCVGTYN 499
HK I+ + + + + S DGT+ +WD CV + N
Sbjct: 186 HKNDIKGIALPQGSDKLFSVSGDGTLLIWDCNSGQCVRSIN 226
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 37.5 bits (83), Expect = 0.006
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTETI--LGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPN 481
SG D T +++D A++ + H+G + V+F + TGS DGT +++D R +
Sbjct: 222 SGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRTGH 281
Query: 482 CVGTYNQGNNG 514
+ Y +G
Sbjct: 282 QLQVYQPHGDG 292
Score = 29.5 bits (63), Expect = 1.5
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Frame = +2
Query: 299 HSYSGGLDQTLKMYDLNASTETIL--GE----HKGAIRCVEFA-SELNAVLTGSWDGTVK 457
H + DQT ++D+ +T + GE H + V + S N ++GS D T +
Sbjct: 171 HLITSSGDQTCILWDVTTGLKTSVFGGEFQSGHTADVLSVSISGSNPNWFISGSCDSTAR 230
Query: 458 MWDSRVPN-CVGTYNQGNNG 514
+WD+R + V T++ G+ G
Sbjct: 231 LWDTRAASRAVRTFH-GHEG 249
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 37.5 bits (83), Expect = 0.006
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTETI--LGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPN 481
SG D T +++D A++ + H+G + V+F + TGS DGT +++D R +
Sbjct: 160 SGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRTGH 219
Query: 482 CVGTYNQGNNG 514
+ Y +G
Sbjct: 220 QLQVYQPHGDG 230
Score = 34.3 bits (75), Expect = 0.054
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 377 HKGAIRCVEFASELNAVLTGSWDGTVKMW 463
H+ I C+ +++ +A+ TGSWD +K+W
Sbjct: 278 HRNRISCLGLSADGSALCTGSWDSNLKIW 306
Score = 29.5 bits (63), Expect = 1.5
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Frame = +2
Query: 299 HSYSGGLDQTLKMYDLNASTETIL--GE----HKGAIRCVEFA-SELNAVLTGSWDGTVK 457
H + DQT ++D+ +T + GE H + V + S N ++GS D T +
Sbjct: 109 HLITSSGDQTCILWDVTTGLKTSVFGGEFQSGHTADVLSVSISGSNPNWFISGSCDSTAR 168
Query: 458 MWDSRVPN-CVGTYNQGNNG 514
+WD+R + V T++ G+ G
Sbjct: 169 LWDTRAASRAVRTFH-GHEG 187
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 37.5 bits (83), Expect = 0.006
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTETI--LGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPN 481
SG D T +++D A++ + H+G + V+F + TGS DGT +++D R +
Sbjct: 222 SGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRTGH 281
Query: 482 CVGTYNQGNNG 514
+ Y +G
Sbjct: 282 QLQVYQPHGDG 292
Score = 34.3 bits (75), Expect = 0.054
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 377 HKGAIRCVEFASELNAVLTGSWDGTVKMW 463
H+ I C+ +++ +A+ TGSWD +K+W
Sbjct: 340 HRNRISCLGLSADGSALCTGSWDSNLKIW 368
Score = 29.5 bits (63), Expect = 1.5
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Frame = +2
Query: 299 HSYSGGLDQTLKMYDLNASTETIL--GE----HKGAIRCVEFA-SELNAVLTGSWDGTVK 457
H + DQT ++D+ +T + GE H + V + S N ++GS D T +
Sbjct: 171 HLITSSGDQTCILWDVTTGLKTSVFGGEFQSGHTADVLSVSISGSNPNWFISGSCDSTAR 230
Query: 458 MWDSRVPN-CVGTYNQGNNG 514
+WD+R + V T++ G+ G
Sbjct: 231 LWDTRAASRAVRTFH-GHEG 249
>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
GTP-binding protein beta chain homolog, Nicotiana
tabacum, PIR:T16970
Length = 438
Score = 37.1 bits (82), Expect = 0.008
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Frame = +2
Query: 305 YSGGLDQTLKMYDLNASTE---TILGE--HKG-AIRCVEFASELNAVLTGSWDGTVKMWD 466
Y+G D + + +NA++E +LG KG AI C+ + ++ N +++GS DG V +WD
Sbjct: 232 YAGARDSKIYIGAINATSEYGTQVLGSVSEKGKAITCLAYCADGNLLISGSEDGVVCVWD 291
Query: 467 SR 472
+
Sbjct: 292 PK 293
Score = 28.7 bits (61), Expect = 2.7
Identities = 8/29 (27%), Positives = 21/29 (72%)
Frame = +2
Query: 377 HKGAIRCVEFASELNAVLTGSWDGTVKMW 463
H ++ C+ F+ + + +++GS DG++++W
Sbjct: 119 HYRSVTCLVFSGDDSLLVSGSQDGSIRVW 147
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 37.1 bits (82), Expect = 0.008
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Frame = +2
Query: 278 VCFRDAVHSY----SGGLDQTLKMYDLNAST--ETILGEHKGAIRCVEFASELNAVLTGS 439
+C D +HS +GG+D T ++D + T+ G H + V+F + + VLT S
Sbjct: 225 ICSMDILHSKDVIATGGVDATAVLFDRPSGQILSTLTG-HSKKVTSVKFVGDSDLVLTAS 283
Query: 440 WDGTVKMW 463
D TV++W
Sbjct: 284 ADKTVRIW 291
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 37.1 bits (82), Expect = 0.008
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Frame = +2
Query: 278 VCFRDAVHSY----SGGLDQTLKMYDLNAST--ETILGEHKGAIRCVEFASELNAVLTGS 439
+C D +HS +GG+D T ++D + T+ G H + V+F + + VLT S
Sbjct: 225 ICSMDILHSKDVIATGGVDATAVLFDRPSGQILSTLTG-HSKKVTSVKFVGDSDLVLTAS 283
Query: 440 WDGTVKMW 463
D TV++W
Sbjct: 284 ADKTVRIW 291
>At1g52730.2 68414.m05959 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 37.1 bits (82), Expect = 0.008
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTETILGE-HKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPN 481
+GG D ++++D E + H G + CV F + +GS DGT+++W + N
Sbjct: 245 AGGEDMWVRVFDFYTGEEIGCNKGHHGPVHCVRFTPTGLSYASGSEDGTIRIWQTTPAN 303
Score = 31.9 bits (69), Expect = 0.29
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +2
Query: 257 HELPVLDVCF-RDAVHSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEFASELNAVLT 433
H+ V C +A+ + S D + K++D EHK +R F+ + ++LT
Sbjct: 60 HKGAVWSSCLDNNALRAASASADFSAKLWDALTGDVLHSFEHKHIVRACAFSEDTKSLLT 119
Query: 434 GSWDGTVKMWD 466
G ++ ++++D
Sbjct: 120 GGFEKILRVFD 130
>At1g52730.1 68414.m05958 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 37.1 bits (82), Expect = 0.008
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTETILGE-HKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPN 481
+GG D ++++D E + H G + CV F + +GS DGT+++W + N
Sbjct: 245 AGGEDMWVRVFDFYTGEEIGCNKGHHGPVHCVRFTPTGLSYASGSEDGTIRIWQTTPAN 303
Score = 31.9 bits (69), Expect = 0.29
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +2
Query: 257 HELPVLDVCF-RDAVHSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEFASELNAVLT 433
H+ V C +A+ + S D + K++D EHK +R F+ + ++LT
Sbjct: 60 HKGAVWSSCLDNNALRAASASADFSAKLWDALTGDVLHSFEHKHIVRACAFSEDTKSLLT 119
Query: 434 GSWDGTVKMWD 466
G ++ ++++D
Sbjct: 120 GGFEKILRVFD 130
>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 461
Score = 36.7 bits (81), Expect = 0.010
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +2
Query: 362 TILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWD--SRVPNCVGTYNQGNNG 514
TI G + A S N + TGS D TVK+WD + P+C+ T+N G
Sbjct: 364 TINGHDEAATSVSYNISAPNLLATGSKDRTVKLWDLSNNEPSCIATHNPNAGG 416
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTETILGEHK---GAIRCVEFASELNAVLT-GSWDGTVKMWDS 469
+G D+T+K++DL+ + + + H G + + F+ + +L G G +K+WD+
Sbjct: 387 TGSKDRTVKLWDLSNNEPSCIATHNPNAGGLFFIAFSPDNPFLLAMGGVMGELKLWDT 444
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 36.7 bits (81), Expect = 0.010
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +2
Query: 290 DAVHSYSGGLDQTLKMYDLNASTETI-LGEHKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
DA H LD T+K++ +++ + L HK + C++ +S+ ++TGS D +K+W
Sbjct: 551 DAKHIAVALLDSTVKVFYMDSLKFYLSLYGHKLPVMCIDISSDGELIVTGSQDKNLKIWG 610
Query: 467 SRVPNC 484
+C
Sbjct: 611 LDFGDC 616
Score = 31.9 bits (69), Expect = 0.29
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +2
Query: 257 HELPVLDVCF-RDAVHSYSGGLDQTLKMYDLNASTETILGE-HKGAIRCVEFASELNAVL 430
H V+ V F R+ + +S G D+ +K +D + + E H I C+ ++ + ++
Sbjct: 623 HGDSVMGVKFVRNTHYLFSIGKDRLVKYWDADKFEHLLTLEGHHAEIWCLAISNRGDFLV 682
Query: 431 TGSWDGTVKMWD 466
TGS D +++ WD
Sbjct: 683 TGSHDRSMRRWD 694
Score = 31.1 bits (67), Expect = 0.51
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 311 GGLDQTLKMYDLNAST-ETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
G D +++++D T E HKGA+ + + + + +GS D + +WD
Sbjct: 82 GYADGSIRIWDTEKGTCEVNFNSHKGAVTALRYNKVGSMLASGSKDNDIILWD 134
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 36.7 bits (81), Expect = 0.010
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTETI-LGEHKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
+G D +K++++ + T I EH A+ + F ++ +++L+ S DGTV+ WD
Sbjct: 366 TGADDNKVKVWNVMSGTCFITFTEHTNAVTALHFMADNHSLLSASLDGTVRAWD 419
Score = 32.3 bits (70), Expect = 0.22
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +2
Query: 356 TETILGEHKGA---IRCVEFASELNAVLTGSWDGTVKMWDSRVPNCVGTYNQGNNGYT 520
TET + + +G + CV ++ + + TG+ D VK+W+ C T+ + N T
Sbjct: 338 TETYILKQQGHYFDVNCVTYSPDSQLLATGADDNKVKVWNVMSGTCFITFTEHTNAVT 395
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 365 ILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
IL H+ + + F+ + + SWD TV++WD
Sbjct: 472 ILSGHEAPVHGLMFSPLTQLLASSSWDYTVRLWD 505
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 135 EDAISSVKFAPKSNQYLLVSSWDCSVRLYDVTAN 236
E + + F+P + Q L SSWD +VRL+DV A+
Sbjct: 477 EAPVHGLMFSPLT-QLLASSSWDYTVRLWDVFAS 509
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 36.7 bits (81), Expect = 0.010
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTETI-LGEHKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
+G D +K++++ + T I EH A+ + F ++ +++L+ S DGTV+ WD
Sbjct: 406 TGADDNKVKVWNVMSGTCFITFTEHTNAVTALHFMADNHSLLSASLDGTVRAWD 459
Score = 32.3 bits (70), Expect = 0.22
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +2
Query: 356 TETILGEHKGA---IRCVEFASELNAVLTGSWDGTVKMWDSRVPNCVGTYNQGNNGYT 520
TET + + +G + CV ++ + + TG+ D VK+W+ C T+ + N T
Sbjct: 378 TETYILKQQGHYFDVNCVTYSPDSQLLATGADDNKVKVWNVMSGTCFITFTEHTNAVT 435
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 365 ILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
IL H+ + + F+ + + SWD TV++WD
Sbjct: 512 ILSGHEAPVHGLMFSPLTQLLASSSWDYTVRLWD 545
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 135 EDAISSVKFAPKSNQYLLVSSWDCSVRLYDVTAN 236
E + + F+P + Q L SSWD +VRL+DV A+
Sbjct: 517 EAPVHGLMFSPLT-QLLASSSWDYTVRLWDVFAS 549
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 36.3 bits (80), Expect = 0.013
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
+G D +++ LN + L +HKG I +++ + + +LTGS D T +WD
Sbjct: 341 TGSCDGQARIWTLNGELISTLSKHKGPIFSLKWNKKGDYLLTGSVDRTAVVWD 393
Score = 32.7 bits (71), Expect = 0.17
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = +2
Query: 233 EYRKT*IHHELPVLDVCFRDAVHSYSGGLDQTLKMYDLNAS--TETILGEHKGAIRCVEF 406
E+++ H P LDV +R+ V + D + + + + +T G H+G + CV++
Sbjct: 398 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDSMIYLCKIGETRPAKTFTG-HQGEVNCVKW 456
Query: 407 ASELNAVLTGSWDGTVKMWD 466
+ + + S D T K+W+
Sbjct: 457 DPTGSLLASCSDDSTAKIWN 476
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTETI-LGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNC 484
S D T+K++D H+ + + F+ + +GS D ++ +W +
Sbjct: 516 SASFDSTVKLWDAELGKMLCSFNGHREPVYSLAFSPNGEYIASGSLDKSIHIWSIKEGKI 575
Query: 485 VGTYNQGNNG 514
V TY GN G
Sbjct: 576 VKTYT-GNGG 584
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 36.3 bits (80), Expect = 0.013
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +2
Query: 344 LNASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
+N ++TI G H A+ CV F+ + + +GS D TV++WD
Sbjct: 98 VNRCSQTIAG-HAEAVLCVSFSPDGKQLASGSGDTTVRLWD 137
Score = 33.5 bits (73), Expect = 0.095
Identities = 14/56 (25%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +2
Query: 308 SGGLDQTLKMYD-LNASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSR 472
S D+++++++ + T+ H G + V ++++ +L+GS D T+K+W+ R
Sbjct: 377 SASFDKSVRLWNGITGQFVTVFRGHVGPVYQVSWSADSRLLLSGSKDSTLKIWEIR 432
Score = 32.7 bits (71), Expect = 0.17
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 320 DQTLKMYDLNASTETI-LGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDS 469
D +++D+ I L H A+ CV++ + + TGS D T+KMW++
Sbjct: 220 DGDARIWDITLKKSIICLSGHTLAVTCVKWGGD-GIIYTGSQDCTIKMWET 269
>At1g49450.1 68414.m05543 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 471
Score = 36.3 bits (80), Expect = 0.013
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +2
Query: 305 YSGGLDQTLKMYDLNAST--ETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRV 475
YSG D+TLK++ L+ S E+I H A+ V + + V TGS DGT+K+W V
Sbjct: 261 YSGSWDKTLKVWRLSDSKCLESIEA-HDDAVNTVVSGFD-DLVFTGSADGTLKVWKREV 317
Score = 33.5 bits (73), Expect = 0.095
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 377 HKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCV 487
H A+ C+ +L + +GSWD T+K+W C+
Sbjct: 244 HFDAVSCLSLNEDLGLLYSGSWDKTLKVWRLSDSKCL 280
>At1g15470.1 68414.m01860 transducin family protein / WD-40 repeat
family protein Strong similarity to gb AF096285
serine-threonine kinase receptor-associated protein from
Mus musculus and contains 5 PF|00400 WD40, G-beta repeat
domains. EST gb|F14050 comes from this gene
Length = 333
Score = 36.3 bits (80), Expect = 0.013
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTETILGE-HKGAIRCVEFASELNAVLTGSWDGTVKMW 463
+GG D + +D E + H G + CV +A + +GS DGTV++W
Sbjct: 240 AGGEDMWVHRFDFQTGEEIGCNKGHHGPVHCVRYAPGGESYTSGSEDGTVRIW 292
Score = 34.7 bits (76), Expect = 0.041
Identities = 16/65 (24%), Positives = 34/65 (52%)
Frame = +2
Query: 287 RDAVHSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
++A+ + S D T K+++ E EHK +R F+ + + +LTG + ++++D
Sbjct: 66 KNAIRAASASADFTAKIWNALTGDELHSFEHKHIVRACAFSEDTHRLLTGGMEKILRIFD 125
Query: 467 SRVPN 481
P+
Sbjct: 126 LNRPD 130
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 35.9 bits (79), Expect = 0.018
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +2
Query: 278 VCFRDAVHS-YSGGLDQTLKMYDLNASTETI-LGEHKGAIRCVEFASELNAVLTGSWDGT 451
V F DA ++GG+D +K++DL T+ L H+ I + + + + +LT D
Sbjct: 186 VSFSDAADKIFTGGVDNDVKVWDLRKGEATMTLEGHQDTITGMSLSPDGSYLLTNGMDNK 245
Query: 452 VKMWDSR 472
+ +WD R
Sbjct: 246 LCVWDMR 252
Score = 35.5 bits (78), Expect = 0.024
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +2
Query: 257 HELPVLDVCFR-DAVHSYSGGLDQTLKMYDLNASTETI-LGEHKGAIR-CVEFASELNAV 427
H+ +LD+ + D S D+T++ +D+ + + EH + C +
Sbjct: 95 HKNAILDLHWTSDGSQIVSASPDKTVRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLI 154
Query: 428 LTGSWDGTVKMWDSRVPNCVGTY 496
++GS DGT K+WD R + T+
Sbjct: 155 ISGSDDGTAKLWDMRQRGAIQTF 177
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTET--ILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
SG D+ + ++ ++ + +L HK AI + + S+ + +++ S D TV+ WD
Sbjct: 70 SGSHDREIFLWRVHGDCKNFMVLKGHKNAILDLHWTSDGSQIVSASPDKTVRAWD 124
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 35.5 bits (78), Expect = 0.024
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Frame = +2
Query: 323 QTLKMYDL-NASTETILGEHKGAI----RCVEFASELNAVLTGSWDGTVKMWDSRVPNCV 487
+ +++YD+ S +L HK + CV + + ++TGS D TV++W++ +C+
Sbjct: 381 EEVRVYDVATMSCSYVLAGHKEVVLSLDTCVSSSGNV-LIVTGSKDKTVRLWNATSKSCI 439
Query: 488 GTYNQGNNG 514
G G+NG
Sbjct: 440 GV-GTGHNG 447
Score = 35.1 bits (77), Expect = 0.031
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTETI-LGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNC 484
+G D+T ++ L + L HK I VEF++ V+T S D TVK+W +C
Sbjct: 516 TGSEDRTASIWRLPDLVHVVTLKGHKRRIFSVEFSTVDQCVMTASGDKTVKIWAISDGSC 575
Query: 485 VGTY 496
+ T+
Sbjct: 576 LKTF 579
Score = 32.3 bits (70), Expect = 0.22
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 13/90 (14%)
Frame = +2
Query: 257 HELPVLDVCFRDAVHSY--SGGLDQTLKMYDL-----------NASTETILGEHKGAIRC 397
H +L V F S+ SG D+TLK++ L N T +++ H I
Sbjct: 445 HNGDILAVAFAKKSFSFFVSGSGDRTLKVWSLDGISEDSEEPINLKTRSVVAAHDKDINS 504
Query: 398 VEFASELNAVLTGSWDGTVKMWDSRVPNCV 487
V A + V TGS D T +W R+P+ V
Sbjct: 505 VAVARNDSLVCTGSEDRTASIW--RLPDLV 532
Score = 31.5 bits (68), Expect = 0.38
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +2
Query: 320 DQTLKMYDLNAST--ETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCVGT 493
D+T+K++ ++ + +T G H ++ F ++ ++ DG +K+W+ C+ T
Sbjct: 562 DKTVKIWAISDGSCLKTFEG-HTSSVLRASFITDGTQFVSCGADGLLKLWNVNTSECIAT 620
Query: 494 YNQ 502
Y+Q
Sbjct: 621 YDQ 623
>At3g50390.1 68416.m05512 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to myosin heavy chain kinase B (gb:U90946)
[Dictyostelium discoideum]
Length = 469
Score = 35.5 bits (78), Expect = 0.024
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 347 NASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCVGTYN 499
N S+ + H AI C+ + + + +GSWD T K+W CV + N
Sbjct: 200 NRSSAALGFRHLDAISCLALSEDKRLLYSGSWDKTFKVWRVSDLRCVESVN 250
Score = 33.9 bits (74), Expect = 0.072
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +2
Query: 305 YSGGLDQTLKMYDLN--ASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMW 463
YSG D+T K++ ++ E++ H+ A+ V + V TGS DGTVK+W
Sbjct: 227 YSGSWDKTFKVWRVSDLRCVESV-NAHEDAVNAVVSGFD-GLVFTGSADGTVKVW 279
>At3g18950.1 68416.m02405 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 473
Score = 35.5 bits (78), Expect = 0.024
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Frame = +2
Query: 305 YSGGLDQTLKMYDLNAST--ETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMW 463
YSG D+TLK++ L+ S E+I H AI V + + + TGS DGT+K+W
Sbjct: 265 YSGSWDKTLKVWRLSDSKCLESIQA-HDDAINTVAAGFD-DLLFTGSADGTLKVW 317
Score = 35.1 bits (77), Expect = 0.031
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 377 HKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCV 487
H A+ C+ EL + +GSWD T+K+W C+
Sbjct: 248 HYDAVSCLSLNEELGLLYSGSWDKTLKVWRLSDSKCL 284
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 35.5 bits (78), Expect = 0.024
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +2
Query: 290 DAVHSYSGGLDQTLKMYDLNAST---ETILGEHKGAIRCVEFASELNAVLTGSWDGTVKM 460
D + GG D L +Y +N + E +L H+GAI + ++ +L+ + + +
Sbjct: 458 DGTEAVIGGQDGKLHLYSINGDSLTEEAVLERHRGAISVIRYSPDLSMFASADLNREAVV 517
Query: 461 WD 466
WD
Sbjct: 518 WD 519
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 377 HKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
HKG+I V ++ + VLT S D + K+WD
Sbjct: 231 HKGSIYAVSWSPDGKQVLTVSADKSAKIWD 260
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 35.5 bits (78), Expect = 0.024
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCV 487
+GG D +++D+ + + H + V V+TGS D T+K WD R +
Sbjct: 271 TGGRDSVCRVWDIRTKMQIFVLPHDSDVFSVLARPTDPQVITGSHDSTIKFWDLRYGKSM 330
Query: 488 GT 493
T
Sbjct: 331 AT 332
Score = 33.5 bits (73), Expect = 0.095
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 299 HSYSGGLDQTLKMYDL--NASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSR 472
+ +S G D+ +K +DL N + G H + C+ L+ VLTG D ++WD R
Sbjct: 226 YMFSAGDDKQVKCWDLEQNKVIRSYHG-HLHGVYCLALHPTLDVVLTGGRDSVCRVWDIR 284
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 365 ILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
+L H G +R V F TGS D T+K+WD
Sbjct: 165 VLQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWD 198
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 35.5 bits (78), Expect = 0.024
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTETILGE------HKGAIRCVEFASELNAVLTGSWDGTVKMWDS 469
SGG D+ ++++D A T +L + HK I + A++ + LTGS D T K+WD
Sbjct: 165 SGGEDKVIRIWD--AETGKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWDM 222
Query: 470 RVPNCVGTY 496
R + TY
Sbjct: 223 RTLTLLKTY 231
Score = 34.3 bits (75), Expect = 0.054
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 377 HKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
H GA+ C + + + + ++TGS D T K+WD
Sbjct: 51 HNGAVWCCDVSRDSSRLITGSADQTAKLWD 80
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 287 RDAVHSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEFA-SELNAVLT 433
RD+ +G DQT K++D+ + E + R V+FA + AV+T
Sbjct: 62 RDSSRLITGSADQTAKLWDVKSGKELFTFKFNAPTRSVDFAVGDRLAVIT 111
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 35.5 bits (78), Expect = 0.024
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTETILGE------HKGAIRCVEFASELNAVLTGSWDGTVKMWDS 469
SGG D+ ++++D A T +L + HK I + A++ + LTGS D T K+WD
Sbjct: 165 SGGEDKVIRIWD--AETGKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWDM 222
Query: 470 RVPNCVGTY 496
R + TY
Sbjct: 223 RTLTLLKTY 231
Score = 34.3 bits (75), Expect = 0.054
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 377 HKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
H GA+ C + + + + ++TGS D T K+WD
Sbjct: 51 HNGAVWCCDVSRDSSRLITGSADQTAKLWD 80
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 287 RDAVHSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEFA-SELNAVLT 433
RD+ +G DQT K++D+ + E + R V+FA + AV+T
Sbjct: 62 RDSSRLITGSADQTAKLWDVKSGKELFTFKFNAPTRSVDFAVGDRLAVIT 111
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 35.5 bits (78), Expect = 0.024
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTETILGE------HKGAIRCVEFASELNAVLTGSWDGTVKMWDS 469
SGG D+ ++++D A T +L + HK I + A++ + LTGS D T K+WD
Sbjct: 165 SGGEDKVIRIWD--AETGKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWDM 222
Query: 470 RVPNCVGTY 496
R + TY
Sbjct: 223 RTLTLLKTY 231
Score = 34.3 bits (75), Expect = 0.054
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 377 HKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
H GA+ C + + + + ++TGS D T K+WD
Sbjct: 51 HNGAVWCCDVSRDSSRLITGSADQTAKLWD 80
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 287 RDAVHSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEFA-SELNAVLT 433
RD+ +G DQT K++D+ + E + R V+FA + AV+T
Sbjct: 62 RDSSRLITGSADQTAKLWDVKSGKELFTFKFNAPTRSVDFAVGDRLAVIT 111
>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 35.5 bits (78), Expect = 0.024
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +2
Query: 269 VLDVCFRDAVHSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEF-ASELNAVLTGSWD 445
+LD+ + + + S +D+T++++ + H + CV F + N ++GS D
Sbjct: 325 ILDLSWSEKGYLLSSSVDETVRLWRVGCDECLRTFTHNNFVTCVAFNPVDDNYFISGSID 384
Query: 446 GTVKMWD 466
G V++WD
Sbjct: 385 GKVRIWD 391
>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 35.5 bits (78), Expect = 0.024
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +2
Query: 269 VLDVCFRDAVHSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEF-ASELNAVLTGSWD 445
+LD+ + + + S +D+T++++ + H + CV F + N ++GS D
Sbjct: 325 ILDLSWSEKGYLLSSSVDETVRLWRVGCDECLRTFTHNNFVTCVAFNPVDDNYFISGSID 384
Query: 446 GTVKMWD 466
G V++WD
Sbjct: 385 GKVRIWD 391
>At1g29260.1 68414.m03578 peroxisomal targeting signal type 2
receptor (PEX7) identical to peroxisomal targeting
signal type 2 receptor (Pex7p) (GI:9502414) [Arabidopsis
thaliana]; WD-40 repeat protein family member; contains
6 WD-40 repeats (PF00400); similar to peroxismal
targeting signal 2 receptor (PTS2R) (Peroxin-7)
(PEX7)(SP:O00628) [Homo sapiens]
Length = 317
Score = 35.5 bits (78), Expect = 0.024
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Frame = +2
Query: 269 VLDVCFRDAVHSYSGGL--DQTLKMYD--LNASTETILG--EHKGAIRCVEF-ASELNAV 427
V DVC+ ++ S D ++K+YD L + I EH ++ V++ + ++
Sbjct: 63 VYDVCWSESHDSVLIAAIGDGSVKIYDTALPPPSNPIRSFQEHAREVQSVDYNPTRRDSF 122
Query: 428 LTGSWDGTVKMWDSRVPNCVGTYNQ 502
LT SWD TVK+W P V T+ +
Sbjct: 123 LTSSWDDTVKLWAMDRPASVRTFKE 147
Score = 27.9 bits (59), Expect = 4.7
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +2
Query: 290 DAVHSYSGGLDQTLKMYDLNASTET-ILGEHKGAIRCVEFASELNAVL-TGSWDGTVKMW 463
D S SG D TL+++D+ T I+ H I ++ + +L T S D TVK+W
Sbjct: 163 DVFASASG--DCTLRIWDVREPGSTMIIPAHDFEILSCDWNKYDDCILATSSVDKTVKVW 220
Query: 464 DSR 472
D R
Sbjct: 221 DVR 223
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 35.1 bits (77), Expect = 0.031
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = +2
Query: 290 DAVHSYSGGLDQTLKMYDLNASTETILGE---HKGAIRCVEFASELNAVLTGSWDGTVKM 460
D + +SG +D L+++D+ T +L E H A+ V + N +LT D +
Sbjct: 368 DGLTVFSGHMDGNLRLWDIQ--TGKLLSEVAGHSSAVTSVSLSRNGNRILTSGRDNVHNV 425
Query: 461 WDSRVPNCVGTYNQGNN 511
+D+R GT N
Sbjct: 426 FDTRTLEICGTLRASGN 442
Score = 31.5 bits (68), Expect = 0.38
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +2
Query: 272 LDVCFRDAVHSYSGGLDQTLKMYDLNAS--TETILGEHKGAIRCVEFASELNAVLTGSWD 445
+DV + H S D+T+K++DL+ T T+L C+ + V +G D
Sbjct: 321 VDVSKFSSRHVVSAAYDRTIKLWDLHKGYCTNTVLFTSNCNAICLSI--DGLTVFSGHMD 378
Query: 446 GTVKMWD 466
G +++WD
Sbjct: 379 GNLRLWD 385
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 377 HKGAIRCVEFASELNAVLTGSWDGTVKMWDS 469
H+G + F + TG D VKMWD+
Sbjct: 230 HEGGCGSIVFEYNSGTLFTGGQDRAVKMWDT 260
>At4g35140.1 68417.m04996 transducin family protein / WD-40 repeat
family protein contains 6 (3 significant) WD-40 repeats;
similar to PC326 protein (GI:200241) (PIR2:S37694)
[Mus musculus]; Human (H326) mRNA, Homo sapiens,
gb:U06631
Length = 496
Score = 35.1 bits (77), Expect = 0.031
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +2
Query: 368 LGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCVGTYNQGN 508
L +HKG + V F +E + +++GS D V +WD ++ N +++ G+
Sbjct: 55 LEKHKGCVNTVSFNAEGDVLISGSDDRRVVLWDWQLGNVKLSFHSGH 101
>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400); similar to
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]; contains non-consensus (GC) donor splice sites
at introns 4 and 6
Length = 1017
Score = 35.1 bits (77), Expect = 0.031
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Frame = +2
Query: 194 FMGLFCEAL*CDREYRKT*IHHELPVLDVCFRDAVHSY--SGGLDQTLKMYDLNASTE-T 364
F LF E++ D Y + + + VC+ + + +Y S D +K++D+ +
Sbjct: 733 FNSLFNESV--DIHYPAIEMPNRSKLSGVCWNNYIRNYLASSDYDGIVKLWDVTTGQAIS 790
Query: 365 ILGEHKGAIRCVEFASELNAVL-TGSWDGTVKMWDSRVPNCVGT 493
EH+ V+F+ L +GS D +VK+W+ NC+GT
Sbjct: 791 HFIEHEKRAWSVDFSEACPTKLASGSDDCSVKLWNINERNCLGT 834
>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); U3
snoRNP-associated 55-kDa protein, Homo sapiens,
gb:NP_004695; Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) [Podospora anserina]
Length = 504
Score = 35.1 bits (77), Expect = 0.031
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +2
Query: 290 DAVHSYSGGLDQTLKMYDLNASTET-ILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
D + +GG+D+ + ++D+ H+ + C+ F + + +GS+D TVK+W+
Sbjct: 233 DGRYLATGGVDRHVHIWDVRTREHVQAFPGHRNTVSCLCFRYGTSELYSGSFDRTVKVWN 292
Query: 467 SRVPNCVGTYNQGNNG 514
+ T N G+ G
Sbjct: 293 VEDKAFI-TENHGHQG 307
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 314 GLDQTLKMYDLNASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMW 463
G D+T+ + + ST I ++ F S+ N L+GS +GTV +W
Sbjct: 324 GRDRTMLYHKVPESTRMIYRAPASSLESCCFISD-NEYLSGSDNGTVALW 372
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 35.1 bits (77), Expect = 0.031
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +3
Query: 144 ISSVKFAPKSNQYLLVSSWDCSVRLYDVTANIERHK 251
I++V+F P S++ +LVSS D VR++D T I + K
Sbjct: 402 ITAVEFCPGSSEKILVSSEDSKVRIFDKTQMIHKFK 437
Score = 33.5 bits (73), Expect = 0.095
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +2
Query: 257 HELPVLDVCFRDAVHSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEF-ASELNAVLT 433
H VLD+ + D+ S D+T++++ + H + CVEF N +
Sbjct: 271 HTGDVLDLAWSDSNLLLSASKDKTVRLWRTGCDQCLHVFHHNNYVTCVEFNPVNKNNFAS 330
Query: 434 GSWDGTVKMW 463
GS DG ++W
Sbjct: 331 GSIDGKARIW 340
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 377 HKGAIRCVEFASELNAVLTGSWDGTVKMW 463
HKG I ++F+ + + TG DG VK+W
Sbjct: 197 HKGKIWTLKFSPDGKYLATGGEDGVVKIW 225
>At5g66240.2 68418.m08345 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (4 copies, 1 weak); similar to Will die slowly
protein. {Drosophila melanogaster} (SP:Q9V3J8)
{Drosophila melanogaster}
Length = 331
Score = 34.7 bits (76), Expect = 0.041
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Frame = +2
Query: 278 VCFRD----AVHSYSGGLDQTLKMYDL--NASTETILGEHKGAIRCVEFASELNAVLTGS 439
VCF ++S G D +L++ L N G H + + S ++GS
Sbjct: 81 VCFTSHPTTVIYSSRNGWDDSLRLLSLHDNKYLRYFKGHHDRVVS-LSLCSGGECFISGS 139
Query: 440 WDGTVKMWDSRVPNCVG 490
D TV +WD RV C G
Sbjct: 140 LDRTVLLWDQRVEKCQG 156
>At5g66240.1 68418.m08344 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (4 copies, 1 weak); similar to Will die slowly
protein. {Drosophila melanogaster} (SP:Q9V3J8)
{Drosophila melanogaster}
Length = 328
Score = 34.7 bits (76), Expect = 0.041
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Frame = +2
Query: 278 VCFRD----AVHSYSGGLDQTLKMYDL--NASTETILGEHKGAIRCVEFASELNAVLTGS 439
VCF ++S G D +L++ L N G H + + S ++GS
Sbjct: 78 VCFTSHPTTVIYSSRNGWDDSLRLLSLHDNKYLRYFKGHHDRVVS-LSLCSGGECFISGS 136
Query: 440 WDGTVKMWDSRVPNCVG 490
D TV +WD RV C G
Sbjct: 137 LDRTVLLWDQRVEKCQG 153
>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); rab11 binding protein, Bos
taurus, EMBL:AF117897
Length = 905
Score = 34.7 bits (76), Expect = 0.041
Identities = 16/67 (23%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +2
Query: 269 VLDVCFRDAVHSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEF-ASELNAVLTGSWD 445
VLD+ + + S +D+T++++D+ + L H + CV+F + + ++GS D
Sbjct: 522 VLDLSWSRSQLLLSSSMDKTVRLWDIETQSCLKLFAHNDYVTCVQFNPLDEDYFISGSLD 581
Query: 446 GTVKMWD 466
+++W+
Sbjct: 582 AKIRIWN 588
>At4g03020.1 68417.m00410 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to L. erythrorhizon LEC14B, GenBank accession
number Q40153
Length = 493
Score = 34.7 bits (76), Expect = 0.041
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Frame = +2
Query: 254 HHELPVLDVCFRDAVHS------YSGGLDQTLKMYDLNASTET-ILGEHKGAIRCVEFAS 412
H L L C+ HS Y+G D ++ +YDL + + +L H +R +
Sbjct: 394 HSVLRTLIRCYFSPAHSTGQKYIYTGSNDSSVYIYDLVSGDKVAVLKHHSSPVRDCNWHP 453
Query: 413 ELNAVLTGSWDGTVKMWD 466
+++ SWDG + W+
Sbjct: 454 YYPTLISSSWDGDLVKWE 471
>At2g19430.1 68415.m02267 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; contains 7 Trp-Asp WD-40
repeats
Length = 367
Score = 34.7 bits (76), Expect = 0.041
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 377 HKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCV 487
H + V S + +LTGS DGT ++WD + CV
Sbjct: 200 HSDYLHTVVSRSSASQILTGSEDGTARIWDCKTGKCV 236
>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 34.3 bits (75), Expect = 0.054
Identities = 19/71 (26%), Positives = 35/71 (49%)
Frame = +2
Query: 299 HSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVP 478
H YSGG DQ L + DL +L + I+ + A + N++ + D +V+ W + V
Sbjct: 311 HVYSGGRDQCLYLTDLATRESVLLCTKEHPIQ--QLALQDNSIWVATTDSSVERWPAEVQ 368
Query: 479 NCVGTYNQGNN 511
+ + +G +
Sbjct: 369 SPKTVFQRGGS 379
>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 34.3 bits (75), Expect = 0.054
Identities = 19/71 (26%), Positives = 35/71 (49%)
Frame = +2
Query: 299 HSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVP 478
H YSGG DQ L + DL +L + I+ + A + N++ + D +V+ W + V
Sbjct: 311 HVYSGGRDQCLYLTDLATRESVLLCTKEHPIQ--QLALQDNSIWVATTDSSVERWPAEVQ 368
Query: 479 NCVGTYNQGNN 511
+ + +G +
Sbjct: 369 SPKTVFQRGGS 379
>At1g47610.1 68414.m05288 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein (GI:2739374)
[Arabidopsis thaliana]
Length = 351
Score = 34.3 bits (75), Expect = 0.054
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 374 EHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCV 487
+H A+ C+ A + + + SWD TVK+W C+
Sbjct: 133 KHSDAVSCLSLAEDQGLLYSASWDRTVKVWRIHDLKCI 170
Score = 34.3 bits (75), Expect = 0.054
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +2
Query: 305 YSGGLDQTLKMYDLN--ASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRV 475
YS D+T+K++ ++ E+I H A+ V A L V TGS DGTVK+W +
Sbjct: 151 YSASWDRTVKVWRIHDLKCIESIKA-HDDAVNSVTTAESL--VFTGSADGTVKVWKREI 206
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 34.3 bits (75), Expect = 0.054
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNAST--ETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMW 463
+GG+D T ++D + T+ G H + ++F + + VLT S D TV++W
Sbjct: 239 TGGIDTTAVLFDRPSGQILSTLTG-HSKKVTSIKFVGDTDLVLTASSDKTVRIW 291
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 33.9 bits (74), Expect = 0.072
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = +2
Query: 290 DAVHSYSGGLDQTLKMY----DLNASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVK 457
D + GG D L +Y D N E +L +H+GA+ + ++ +L +G +
Sbjct: 322 DGKEAIVGGQDGKLHIYSVSGDNNLKEEAVLEKHRGALTVIRYSPDLTMFASGDANREAV 381
Query: 458 MWD 466
+WD
Sbjct: 382 VWD 384
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 377 HKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCVGT 493
HKG+I V ++ + VLT S D + K+W+ +G+
Sbjct: 95 HKGSIYAVSWSPDSKRVLTVSADKSAKVWEVAEDGTIGS 133
>At5g50120.1 68418.m06207 transducin family protein / WD-40 repeat
family protein Similar to En/Spm-like transposon protein
(gi:2739374)[Arabidopsis thaliana]; similar to
GTP-binding regulatory protein and WD-repeat protein;
contains 7 WD-40 repeats
Length = 388
Score = 33.5 bits (73), Expect = 0.095
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Frame = +2
Query: 230 REYRKT*IHHELPVLDVCF-RDAVHSYSGGLDQTLKMYDLN--ASTETILGEHKGAIRCV 400
R + + +HH V + RD YS D+TLK++ E+ H AI V
Sbjct: 155 RHKKASWVHHVDAVSGLALSRDGTLLYSVSWDRTLKIWRTTDFKCLESFTNAHDDAINAV 214
Query: 401 EFASELNAVLTGSWDGTVKMWDSRV 475
SE + TGS D +K+W +
Sbjct: 215 AL-SENGDIYTGSSDQRIKVWRKNI 238
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 33.5 bits (73), Expect = 0.095
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTETI-LGEHKGAIRCVEFASELNA-VLTGSWDGTVKMWDSRVPN 481
+GG D +++D+ + L H + C F + V+TGS D T+K WD R
Sbjct: 277 TGGRDSVCRVWDIRTKMQIFALSGHDNTV-CSVFTRPTDPQVVTGSHDTTIKFWDLRYGK 335
Query: 482 CVGT 493
+ T
Sbjct: 336 TMST 339
Score = 33.1 bits (72), Expect = 0.13
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 299 HSYSGGLDQTLKMYDL--NASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSR 472
+ +S G D+ +K +DL N + G H + C+ L+ +LTG D ++WD R
Sbjct: 232 YMFSAGDDKQVKCWDLEQNKVIRSYHG-HLSGVYCLALHPTLDVLLTGGRDSVCRVWDIR 290
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 365 ILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
++ H G +R V F TGS D T+K+WD
Sbjct: 171 VIQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWD 204
>At1g27840.1 68414.m03412 transducin family protein / WD-40 repeat
family protein contains similarity to cockayne syndrome
complementation group A protein GB:U28413 GI:975301 from
[Homo sapiens]; confirmed by cDNA gi:1598289
Length = 450
Score = 33.5 bits (73), Expect = 0.095
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = +2
Query: 308 SGGLDQTLKMYDL--NASTETILGEHKGAIRCVEFASELNAVL-TGSWDGTVKMWDSRVP 478
+G D +++ D+ A + T+ G H+ + VE+++ VL TG DG ++ WD R
Sbjct: 165 AGTEDVQVRLCDIASGAFSHTLSG-HRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRA 223
Query: 479 NCVGTYNQ 502
C +Q
Sbjct: 224 GCFRVLDQ 231
>At4g29380.1 68417.m04197 protein kinase family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat; contains Pfam PF00069: Protein kinase domain;
contains PF02985: HEAT repeat; similar to adaptor protein
(GI:1817584) [Homo sapiens]; similar to VPS15 protein
(GI:6103009) [Pichia pastoris]
Length = 1494
Score = 33.1 bits (72), Expect = 0.13
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 368 LGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSR 472
L EH+ A+ + +S+ + ++ S D TVK+WDSR
Sbjct: 1077 LQEHRSAVNDIATSSDHSFFVSASDDSTVKVWDSR 1111
>At4g28450.1 68417.m04071 transducin family protein / WD-40 repeat
family protein SOF1 (involved in rRNA processing)
protein-yeast
Length = 442
Score = 33.1 bits (72), Expect = 0.13
Identities = 17/81 (20%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = +2
Query: 257 HELPVLDVCFRDAVHSY-SGGLDQTLKMYDLNA--STETILGEHKGAIRCVEFASELNAV 427
H V+D+ F + +G D++++++ N S E + + CV+++ + V
Sbjct: 278 HVSAVMDIDFSPTGREFVTGSYDRSVRIFPYNGGHSREIYHTKRMQRVFCVKYSCDATYV 337
Query: 428 LTGSWDGTVKMWDSRVPNCVG 490
++GS D +++W ++ +G
Sbjct: 338 ISGSDDTNLRLWKAKASEQLG 358
Score = 31.5 bits (68), Expect = 0.38
Identities = 14/60 (23%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +2
Query: 305 YSGGLDQTLKMYDLNAS-TETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPN 481
+S +D ++++D+++ T H+GA+R + +++ N +++ D TV++W+ P+
Sbjct: 73 FSASMDGDIRLWDISSRRTVCQFPGHQGAVRGLTASTDGNVLVSCGTDCTVRLWNVPRPS 132
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 138 DAISSVKFAPKSNQYLLVSSWDCSVRLYDVTANIERHKYIM 260
D++ SV+F P L S+ D S+ +YD+ + K IM
Sbjct: 194 DSVISVRFNPGEPNLLATSASDRSITIYDLRLSSAARKIIM 234
>At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1)
identical to phytochrome A supressor spa1 (GI:4809171)
[Arabidopsis thaliana]; contains 8 WD-40 repeats (Pfam
PF00400) (1 weak)
Length = 1029
Score = 33.1 bits (72), Expect = 0.13
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Frame = +2
Query: 290 DAVHSYSGGLDQTLKMYDLNASTETILGEH--------KGAIRCVEFASEL-NAVLTGSW 442
D H + G+ + +K++D NA +G H K + CV + S + N + + +
Sbjct: 727 DEEHIAAAGISKKIKIFDFNAFMNESVGVHYPLVEMVNKSKLSCVCWNSYIKNYLASTDY 786
Query: 443 DGTVKMWDS 469
DG V++WD+
Sbjct: 787 DGVVQIWDA 795
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 33.1 bits (72), Expect = 0.13
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = +2
Query: 365 ILGEHKGAIRCVEFASELNAVLTGSWDGTVKMW----DSRVPNCVGTYNQGNNGYT 520
+L H ++ V++ ++ + + S+D T+K+W D CV T + NNG++
Sbjct: 158 VLTGHTQDVKMVQWHPTMDVLFSCSYDNTIKVWWSEDDDGEYQCVQTLGESNNGHS 213
>At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-related
contains Pfam PF00400: WD domain, G-beta repeat; similar
to Lipopolysaccharide-responsive and beige-like anchor
protein (CDC4-like protein) (Beige-like protein)
(SP:P50851) [Homo sapiens}
Length = 1280
Score = 33.1 bits (72), Expect = 0.13
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 377 HKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
HK + CV ++ + TGS+D TV +WD
Sbjct: 1045 HKDVVSCVAVTADSTILATGSYDTTVMVWD 1074
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 365 ILGEHKGAIRCVEFASELNAVLTGSWDGT 451
IL H I C+ +++L+ V++GS DGT
Sbjct: 1106 ILCGHDDIITCLYVSTDLDIVISGSKDGT 1134
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 32.7 bits (71), Expect = 0.17
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = +2
Query: 356 TETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVP----NCVGTYNQGNNGYT 520
T +L H ++ V + ++ + + S+D T+K+W S NCV T ++ NNG++
Sbjct: 131 TIAVLTGHSEDVKMVLWHPTMDVLFSCSYDNTIKIWCSEDEDGDYNCVQTLSELNNGHS 189
>At3g53390.1 68416.m05892 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 558
Score = 32.7 bits (71), Expect = 0.17
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +2
Query: 290 DAVHSYSGGLDQTLKMYDLNASTETILGE-HKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
D H + G D L+++D G+ + GA+ C ++ + +LTG D V++W
Sbjct: 314 DGAHLATVGRDGYLRIFDFLTQKLVCGGKSYYGALLCCSWSMDGKYILTGGEDDLVQVW- 372
Query: 467 SRVPNCVGTYNQGNNGY 517
S V + +G+N +
Sbjct: 373 SMEDRKVVAWGEGHNSW 389
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 32.3 bits (70), Expect = 0.22
Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +2
Query: 257 HELPVLDVCFRDAVHSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEF-ASELNAVLT 433
H VLD+ + + S +D+T++++ + ++ + H + V+F N ++
Sbjct: 327 HTGEVLDISWSKDNYLLSASMDKTVRLWKVGSNDCLGVFAHNSYVTSVQFNPVNENYFMS 386
Query: 434 GSWDGTVKMWD 466
GS DG V++W+
Sbjct: 387 GSIDGKVRIWN 397
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +2
Query: 377 HKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCVGTYNQGNNGY 517
H G + + ++ + N +L+ S D TV++W +C+G + +N Y
Sbjct: 327 HTGEVLDISWSKD-NYLLSASMDKTVRLWKVGSNDCLGVF--AHNSY 370
>At4g38480.1 68417.m05438 transducin family protein / WD-40 repeat
family protein contains contains Pfam PF00400: WD
domain, G-beta repeat (7 copies, 3 weak);similar to gene
PC326 protein - mouse, PIR2:S37694
Length = 471
Score = 32.3 bits (70), Expect = 0.22
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +2
Query: 368 LGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCVGTYNQGN 508
L +HKG + V F ++ + +L+GS D V +WD + + +++ G+
Sbjct: 51 LDKHKGCVNTVSFNADGDILLSGSDDRQVILWDWQTASVKLSFDSGH 97
>At1g19750.1 68414.m02469 transducin family protein / WD-40 repeat
family protein similar to Cockayne syndrome
complementaion group A proteins (GI:18077663)[Mus
musculus] and (SP:Q13216)[Homo sapiens]; confirmed by
full-length cDNA GI:15982896
Length = 450
Score = 32.3 bits (70), Expect = 0.22
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +2
Query: 308 SGGLDQTLKMYDL--NASTETILGEHKGAIRCVEFASELNAVL-TGSWDGTVKMWDSRVP 478
+G D +++ D+ A + T+ G H+ + VE+++ VL TG DG ++ WD R
Sbjct: 165 AGTDDVQVRLCDIASGAFSHTLSG-HRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRA 223
Query: 479 NC 484
C
Sbjct: 224 GC 225
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 31.9 bits (69), Expect = 0.29
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 10/77 (12%)
Frame = +2
Query: 308 SGGLDQTLKMYDL-----NASTETI--LGEHKGAIRCVE---FASELNAVLTGSWDGTVK 457
SGG D + ++D N++T+ + L EH A++ + F + L A G D T+K
Sbjct: 283 SGGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAVKALAWCPFQANLLATGGGGGDRTIK 342
Query: 458 MWDSRVPNCVGTYNQGN 508
W++ C+ + + G+
Sbjct: 343 FWNTHTGACLNSVDTGS 359
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 31.9 bits (69), Expect = 0.29
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 10/77 (12%)
Frame = +2
Query: 308 SGGLDQTLKMYDL-----NASTETI--LGEHKGAIRCVE---FASELNAVLTGSWDGTVK 457
SGG D + ++D N++T+ + L EH A++ + F + L A G D T+K
Sbjct: 273 SGGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAVKALAWCPFQANLLATGGGGGDRTIK 332
Query: 458 MWDSRVPNCVGTYNQGN 508
W++ C+ + + G+
Sbjct: 333 FWNTHTGACLNSVDTGS 349
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 31.9 bits (69), Expect = 0.29
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNA-STETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVP 478
S G D+ + ++++ E+ EH I V F + T S+D T+K+WD+ P
Sbjct: 525 SAGHDKKVFIWNMETLQVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDP 582
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 31.9 bits (69), Expect = 0.29
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNA-STETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVP 478
S G D+ + ++++ E+ EH I V F + T S+D T+K+WD+ P
Sbjct: 527 SAGHDKKVFIWNMETLQVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDP 584
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 31.9 bits (69), Expect = 0.29
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNA-STETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVP 478
S G D+ + ++++ E+ EH I V F + T S+D T+K+WD+ P
Sbjct: 527 SAGHDKKVFIWNMETLQVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDP 584
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 31.9 bits (69), Expect = 0.29
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNA-STETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVP 478
S G D+ + ++++ E+ EH I V F + T S+D T+K+WD+ P
Sbjct: 527 SAGHDKKVFIWNMETLQVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDP 584
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 31.9 bits (69), Expect = 0.29
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNA-STETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVP 478
S G D+ + ++++ E+ EH I V F + T S+D T+K+WD+ P
Sbjct: 527 SAGHDKKVFIWNMETLQVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDP 584
>At2g26490.1 68415.m03178 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
related to En/Spm transposon family of maize
Length = 465
Score = 31.9 bits (69), Expect = 0.29
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 374 EHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCV 487
+H A+ C+ E + + SWD T+K+W C+
Sbjct: 204 KHADAVSCLSLNDEQGLLYSASWDRTIKVWRIADSKCL 241
Score = 31.1 bits (67), Expect = 0.51
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 305 YSGGLDQTLKMYDL-NASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMW 463
YS D+T+K++ + ++ + H A+ V +E V +GS DGTVK W
Sbjct: 222 YSASWDRTIKVWRIADSKCLESIPAHDDAVNSVVSTTEA-IVFSGSADGTVKAW 274
>At5g15550.2 68418.m01821 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 402
Score = 31.5 bits (68), Expect = 0.38
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 365 ILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDS 469
IL HK +++ V N V + SWD T+ +W++
Sbjct: 200 ILRGHKASVQSVSAQKSGNMVCSSSWDCTINLWNT 234
>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 433
Score = 31.5 bits (68), Expect = 0.38
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 365 ILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDS 469
IL HK +++ V N V + SWD T+ +W++
Sbjct: 200 ILRGHKASVQSVSAQKSGNMVCSSSWDCTINLWNT 234
>At4g34380.1 68417.m04884 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Myosin heavy chain kinase B (MHCK
B).(SP:P90648) [Dictyostelium discoideum]
Length = 495
Score = 31.5 bits (68), Expect = 0.38
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 305 YSGGLDQTLKMYDL-NASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMW 463
YS D T+K++ + ++ + H AI V + + V TGS DGTVK+W
Sbjct: 251 YSSSWDTTIKVWRIADSKCLESIHAHDDAINSVMSGFD-DLVFTGSADGTVKVW 303
Score = 30.7 bits (66), Expect = 0.67
Identities = 11/49 (22%), Positives = 24/49 (48%)
Frame = +2
Query: 341 DLNASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCV 487
++ + ++ +H A+ + EL + + SWD T+K+W C+
Sbjct: 222 EVRRNRNSVKTKHNDAVSSLSLDVELGLLYSSSWDTTIKVWRIADSKCL 270
>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to block of proliferation protein Bop1
(GI:1679772) [Mus musculus]
Length = 753
Score = 31.5 bits (68), Expect = 0.38
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 377 HKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCV 487
H GA+ + S + +GS DG+V+MW+ C+
Sbjct: 422 HTGAVTSISTDSSGEWIASGSTDGSVRMWEVETGRCL 458
>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
family protein similar to Transcriptional repressor
rco-1 (SP:P78706) [Neurospora crassa]; similar to
TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
Length = 648
Score = 31.5 bits (68), Expect = 0.38
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +2
Query: 377 HKGAIRCVEFASELNAVLTGSWDGTVKMWDSR 472
H I V+F+S+ +L+ S+DG++K+WD R
Sbjct: 372 HTDDITSVKFSSDGRILLSRSFDGSLKVWDLR 403
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 320 DQTLKMYDLNASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
D Y + S E L H + + S VL+GS+D TV+M+D
Sbjct: 157 DNEENRYQIPLSNEIQLKGHTKIVSSLAVDSAGARVLSGSYDYTVRMYD 205
>At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 (4
significant) WD-40 repeats (PF0400); identical to WD-40
repeat protein MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 507
Score = 31.5 bits (68), Expect = 0.38
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTETILGE-------HKGAIRCVEFASELNAVL-TGSWDGTVKMW 463
+G D T++++D T +G HK A+ CV+++ + ++V + + DG + +W
Sbjct: 355 TGSADNTVRLFDRRKLTANGVGSPIYKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIW 414
Query: 464 D 466
D
Sbjct: 415 D 415
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 31.1 bits (67), Expect = 0.51
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +2
Query: 257 HELPVLDVCFRDAVHSYSGGLDQTLKMYDL-NASTETILGEHKGAIRCVEFASELNAVLT 433
H L V+ + + A YSG +D+T+K++ L N L +H + + + +L+
Sbjct: 273 HTLAVVTL-YVGANRLYSGSMDKTIKVWSLDNLQCIQTLTDHSSVVMSLICWDQF--LLS 329
Query: 434 GSWDGTVKMW 463
S D TVK+W
Sbjct: 330 CSLDNTVKIW 339
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +2
Query: 362 TILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCVGTYNQG 505
T L H+ + + S + + TGS D T+++WD C G G
Sbjct: 145 TQLDGHEKLVSGIALPSGSDKLYTGSKDETLRVWDCASGQCTGVLKLG 192
>At5g45760.2 68418.m05626 transducin family protein / WD-40 repeat
family protein
Length = 334
Score = 31.1 bits (67), Expect = 0.51
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +2
Query: 368 LGEHKGAIRCVEFA---SELNAVLTGSWDGTVKMWDSRVPNCVGTYNQGNN 511
+G H A+ CV F+ + +++G D TVK+WD C+ N NN
Sbjct: 244 VGGHNSAVSCVAFSLFQEKGRFLISGGNDKTVKIWDCF--KCLDPNNNNNN 292
>At5g45760.1 68418.m05625 transducin family protein / WD-40 repeat
family protein
Length = 360
Score = 31.1 bits (67), Expect = 0.51
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +2
Query: 368 LGEHKGAIRCVEFA---SELNAVLTGSWDGTVKMWDSRVPNCVGTYNQGNN 511
+G H A+ CV F+ + +++G D TVK+WD C+ N NN
Sbjct: 270 VGGHNSAVSCVAFSLFQEKGRFLISGGNDKTVKIWDCF--KCLDPNNNNNN 318
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 31.1 bits (67), Expect = 0.51
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNAS-----TETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSR 472
S DQT +++++A T++G HK I + ++ + VLT + ++ WD
Sbjct: 291 SSSKDQTAIIWEISADGHISLKHTLVGHHKPVI-AILWSPDDRQVLTCGAEEVIRRWDVD 349
Query: 473 VPNCVGTYNQG 505
+CV Y +G
Sbjct: 350 SGDCVHMYEKG 360
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 31.1 bits (67), Expect = 0.51
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 362 TILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCVGTYNQG 505
T L H+ + + S + + T S D TV++WD C G N G
Sbjct: 138 TQLDGHQKVVTGIALPSGSDKLYTASKDETVRIWDCASGQCTGVLNLG 185
>At4g18905.1 68417.m02787 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 494
Score = 31.1 bits (67), Expect = 0.51
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 419 NAVLTGSWDGTVKMWD--SRVPNCVGTYNQGNNG 514
N + TGS D +VK+WD + P+C+ T+ Q N G
Sbjct: 418 NLLATGSMDKSVKLWDLSNNEPSCIATH-QPNAG 450
>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
family protein similar to CPY (GI:3096961) {Chironomus
thummi}; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
Length = 2471
Score = 31.1 bits (67), Expect = 0.51
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 377 HKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCV 487
H G++ + + LTGS DG VK+WD++ +
Sbjct: 2374 HLGSVTKIATIPRTSLFLTGSKDGEVKLWDAKAAKLI 2410
>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
family protein similar to Pop3 (GI:3434986)
[Schizosaccharomyces pombe]; contains Pfam PF00400: WD
domain, G-beta repeat (6 copies, 2 weak);
Length = 312
Score = 31.1 bits (67), Expect = 0.51
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 377 HKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNC 484
H + V F + + +GS DG+VK+WD RV C
Sbjct: 83 HTKNVMAVGFQYTGHMMYSGSEDGSVKIWDLRVREC 118
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 30.7 bits (66), Expect = 0.67
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 308 SGGLDQTLKM-YDLNASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDS 469
S G D+ + Y +T L EH I + F+ + T S+D TV++WD+
Sbjct: 668 SAGHDKKAVLWYTDTMKPKTTLEEHTAMITDIRFSPSQLRLATSSFDKTVRVWDA 722
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 314 GLDQTLKMYDLNASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMW 463
G Q+L++++++ + L H+G I + ++ V + S D VK+W
Sbjct: 881 GCYQSLELWNMSENKTMTLPAHEGLITSLAVSTATGLVASASHDKLVKLW 930
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 30.7 bits (66), Expect = 0.67
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 377 HKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCVGTYNQGNNG 514
H+ A+ C F V+TGS D VK+W C+ + +G+ G
Sbjct: 304 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETALCLASC-RGHEG 348
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +2
Query: 362 TILGEHKGAIRCVEFASELNAV---LTGSWDGTVKMWDSR 472
++L H GA+ + F+ +V L+ S DGT ++WD+R
Sbjct: 383 SVLRGHTGAVTAIAFSPRQASVYQLLSSSDDGTCRIWDAR 422
>At1g24130.1 68414.m03044 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats
(PF00400);similar to beta transducin-like protein
HET-D2Y (GI:17225210) [Podospora anserina].
Length = 415
Score = 30.3 bits (65), Expect = 0.89
Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 7/129 (5%)
Frame = +2
Query: 107 HRVQIKKLT--RRRYFER*ICTEI*PVLAGIFMGLFCEAL*CD-REYRK-T*IHHELPVL 274
H++++ K+ R ++ C P + F LF + R ++K T +HH V
Sbjct: 137 HKIRVWKIIDESNRRGQKYKCVATLPTMNDRFKTLFSSKSYVEVRRHKKCTWVHHVDAVS 196
Query: 275 DVCF-RDAVHSYSGGLDQTLKMYDLN--ASTETILGEHKGAIRCVEFASELNAVLTGSWD 445
+ +D YS D++ K++ + ++I H AI + + + V TGS D
Sbjct: 197 SLALSQDGSLLYSASWDRSFKIWRTSDFKCLDSIEKAHDDAINAIVVSKD-GFVYTGSAD 255
Query: 446 GTVKMWDSR 472
+K+W+ +
Sbjct: 256 KKIKVWNKK 264
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 365 ILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCVGTY 496
IL H+GA+ F + N LT D T+++W+ + TY
Sbjct: 13 ILKGHEGAVLAARFNGDGNYALTCGKDRTIRLWNPHRGILIKTY 56
Score = 29.5 bits (63), Expect = 1.5
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +2
Query: 275 DVCFRDA-VHSYSGGLDQTLKMYDL-NASTETILGEHKGAIRCVEFASELNAVLTGSWDG 448
D C ++ H G D + +DL +A + H + V + + + +LT S DG
Sbjct: 233 DCCLTNSDAHVIGGSEDGLVFFWDLVDAKVLSKFRAHDLVVTSVSYHPKEDCMLTSSVDG 292
Query: 449 TVKMW 463
T+++W
Sbjct: 293 TIRVW 297
Score = 28.3 bits (60), Expect = 3.6
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +2
Query: 377 HKGAIRCVEFASELNAVLTGSWDGTVKMWDSR 472
H G + V+F + V++ +D ++++WD R
Sbjct: 101 HDGEVNAVKFNDSSSVVVSAGFDRSLRVWDCR 132
>At5g52250.1 68418.m06485 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to photomorphogenesis repressor PnCOP1
(GI:11127996) [Ipomoea nil]
Length = 385
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 311 GGLDQTLKMYDLNASTET--ILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
G D+ +YD+ + +L H + F + ++TGS DG++K WD
Sbjct: 231 GCADRNAYVYDIRRLVDPLIVLDGHTKTVTYARFMDS-HTIVTGSTDGSLKQWD 283
Score = 27.9 bits (59), Expect = 4.7
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +2
Query: 308 SGGLDQTLKMYDLNASTETI-LGEHKGA-IRCVEFASELNAVL--TGSWDGTVKMWDSR 472
SG D + YD+ EH G I V++ +++ +GS DGTV+MWD R
Sbjct: 140 SGDYDGVVTEYDVEKQVPVSERDEHGGRRIWSVDYTLYNGSLIGASGSDDGTVQMWDPR 198
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 377 HKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCVGTYNQGN 508
H G I + + S+ N +L+ S D +V++W +C+G ++ N
Sbjct: 355 HSGDILDISW-SKNNRLLSASVDNSVRLWQIGCEDCLGIFSHNN 397
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 377 HKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCVGTYNQGN 508
H G I + + S+ N +L+ S D +V++W +C+G ++ N
Sbjct: 355 HSGDILDISW-SKNNRLLSASVDNSVRLWQIGCEDCLGIFSHNN 397
>At1g78070.2 68414.m09098 WD-40 repeat family protein contains Pfam
profile PF00400: WD domain, G-beta repeat
Length = 447
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Frame = +3
Query: 72 STMTVTRVAESRTEF--KLKSLPEDAISSVKF--APKSNQYLLVSSWDCSVRLYDVT 230
S +++++ E F KL S D +SV AP + ++ ++ DC+VRL+D T
Sbjct: 210 SKESLSKINEPEVAFCTKLTSADNDITNSVDIYNAPSGSLRVMTANNDCTVRLFDAT 266
>At5g60940.2 68418.m07645 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 337
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 368 LGEHKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
L EHK +RC F+ + TG D ++K+++
Sbjct: 27 LSEHKSVVRCARFSPDGMFFATGGADTSIKLFE 59
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 383 GAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCV 487
GAI V ++S + +T S DG ++++D CV
Sbjct: 175 GAINQVRYSSTGSIYITASKDGAIRLFDGVSAKCV 209
>At5g60940.1 68418.m07644 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 429
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 368 LGEHKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
L EHK +RC F+ + TG D ++K+++
Sbjct: 119 LSEHKSVVRCARFSPDGMFFATGGADTSIKLFE 151
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 383 GAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCV 487
GAI V ++S + +T S DG ++++D CV
Sbjct: 267 GAINQVRYSSTGSIYITASKDGAIRLFDGVSAKCV 301
>At5g14530.1 68418.m01703 transducin family protein / WD-40 repeat
family protein similar to Will die slowly protein
(SP:Q9V3J8) [Drosophila melanogaster] ; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies, 1 weak)
Length = 330
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +2
Query: 329 LKMYDLNASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCVG 490
L MYD N G HK + + + ++ ++GS D +V++WD RV C G
Sbjct: 99 LSMYD-NRILRYFKG-HKDRVVSLCMSPINDSFMSGSLDRSVRLWDLRVNACQG 150
>At4g35370.1 68417.m05025 transducin family protein / WD-40 repeat
family protein contains 4 (3 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 414
Score = 29.5 bits (63), Expect = 1.5
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = +2
Query: 299 HSYSGGL-DQTLKMYDLNASTET---ILGEHKGAIRCVEFASEL-NAVLTGSWDGTVKMW 463
HS+ L D T+K +D AS + I+ H + + + N + TGS D +VK+W
Sbjct: 314 HSFVVSLKDGTVKGFDTRASDLSPSFIIHAHDSEVSSISYNIHAPNLLATGSADESVKLW 373
Query: 464 D 466
D
Sbjct: 374 D 374
>At3g51930.1 68416.m05696 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
myosin heavy chain kinase B (SP:P90648)(GI:1903458)
[Dictyostelium discoideum]
Length = 415
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 374 EHKGAIRCVEFASELNAVLTGSWDGTVKMW 463
EH +I C+ A + +GSWD T+K+W
Sbjct: 172 EHADSISCL--AVHAGIIYSGSWDKTLKVW 199
>At2g37160.1 68415.m04559 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 544
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Frame = +2
Query: 290 DAVHSYSGGLDQTLKMYDLNASTETILG--EHKGAIRCVEFASELNAVLTGSWDGTVKMW 463
D + + G D L+++D + + + G + GA+ C ++ + +LTG D V++W
Sbjct: 314 DGAYLATVGRDGYLRIFDFSTQ-KLVCGVKSYYGALLCCAWSMDGKYLLTGGEDDLVQVW 372
Query: 464 DSRVPNCVGTYNQGNNGY 517
S V + +G+N +
Sbjct: 373 -SMEDRKVVAWGEGHNSW 389
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +2
Query: 362 TILGEHKGAIRCVEFASELNA---VLTGSWDGTVKMWDSR 472
++L H GA+ + F+ + +L+ S DGT ++WD+R
Sbjct: 323 SVLRGHTGAVTAIAFSPRPGSPYQLLSSSDDGTCRIWDAR 362
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 377 HKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCVGTYNQGNNG 514
H+ A+ C V+TGS D VK+W C+ + +G+ G
Sbjct: 244 HRNAVYCAILDRSGRYVITGSDDRLVKVWSMDTAYCLASC-RGHEG 288
>At4g29860.1 68417.m04250 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); WDVCF
variant 1 (gi:12006981) [Mus musculus]
Length = 386
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 365 ILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDS 469
+L H+ ++ V F + + TGS DG +++WD+
Sbjct: 12 VLRGHRHSVMDVSFHPSKSLLFTGSADGELRIWDT 46
Score = 28.7 bits (61), Expect = 2.7
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Frame = +2
Query: 257 HELPVLDVCFRDAVHS-YSGGLDQTLKMYDLNASTE--TILGE---HKGAIRCVEFASEL 418
H PVL + + SGG D + MY+LN ST TI E + + +
Sbjct: 261 HSEPVLSLSVASSCDGGISGGADDKIVMYNLNHSTGSCTIRKEITLERPGVSGTSIRVDG 320
Query: 419 NAVLTGSWDGTVKMWDSRVPNCV 487
T WD +++++ R N +
Sbjct: 321 KIAATAGWDHRIRVYNYRKGNAL 343
>At3g51050.1 68416.m05590 FG-GAP repeat-containing protein
Length = 698
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/52 (21%), Positives = 21/52 (40%)
Frame = +2
Query: 290 DAVHSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEFASELNAVLTGSWD 445
D V +++ Q + ++ + H G C EF + +V+ WD
Sbjct: 257 DDVEAHTSDASQLIPQHNYKLDVHALNSRHPGEFECREFRESILSVMPHRWD 308
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 377 HKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCVG 490
H AI + + + +LT S D T+K+WD C G
Sbjct: 127 HYNAIFDISWIKGDSCLLTASGDQTIKVWDVEENKCTG 164
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 320 DQTLKMYDLNASTETILGE-HKGAIRCVEFASELNAVLTGSWDGTVKMWDSR 472
D+T +++D+N E +L E H ++ + F + + D ++WD R
Sbjct: 360 DKTWRLWDINTGAELLLQEGHSRSVYGIAFQQDGALAASCGLDSLARVWDLR 411
>At5g59940.1 68418.m07516 DC1 domain-containing protein / UV-B
light-insensitive protein, putative similar to ULI3
(UV-B light insensitive) [Arabidopsis thaliana]
GI:17225050; contains Pfam profile PF03107: DC1 domain
Length = 651
Score = 28.7 bits (61), Expect = 2.7
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 323 DLVHHYMNEQHPENKHQEPAVHDVF 249
+L+ H+ +EQH H+E +HD +
Sbjct: 363 NLISHFSHEQHTLRLHKEGIIHDAY 387
>At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to pre-mRNA splicing
factor PRP17 (SP:O60508) [Homo sapiens]
Length = 457
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 87 TRVAESRTEFKLKSLPED-AISSVKFAPKSNQYLLVSSWDCSVRLYDVTANIERHKYI 257
+R+ + + +S ED + VKF P + L S+RL+D+ AN H+Y+
Sbjct: 229 SRLFDVERGVETQSFKEDEVVGVVKFHPDNCNVFLSGGSKGSLRLWDIRANKFVHEYV 286
>At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-related
contains Pfam PF00400: WD domain, G-beta repeat; similar
to BEIGE (GI:3928547) [Rattus norvegicus]; lysosomal
trafficking regulator - Bos taurus, EMBL: AF114785
Length = 3471
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +2
Query: 320 DQTLKM--YDLNASTETILGEHKG-AIRCVEFASELNAVLTGSWDGTVKMW 463
D+TL+ YD + T H+G I+C + + V+TG+ DG V +W
Sbjct: 3251 DRTLRFMSYDQDKLLSTHENLHEGNQIQCAGVSHDGRIVVTGAEDGLVSVW 3301
>At4g00090.1 68417.m00009 transducin family protein / WD-40 repeat
family protein similar to Transducin beta-like 2 protein
(WS beta-transducin repeats protein) (WS-betaTRP)
(Williams-Beuren syndrome chromosome region 13 protein)
(SP:Q9Y4P3) {Homo sapiens}
Length = 430
Score = 28.7 bits (61), Expect = 2.7
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 377 HKGAIRCVEFASELNAVLTGSWDGTVKMWDSRV 475
HK A+ + F+ ++T S DG++++W+ V
Sbjct: 288 HKSAVTWLCFSPNSEQIITASKDGSIRVWNINV 320
>At3g45620.1 68416.m04927 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats; similar to
PC326 protein (GI:200241) (PIR2:S37694) [Mus
musculus];Human (H326) translated mRNA - Homo sapiens,
EMBL:HS06631
Length = 481
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 368 LGEHKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
L H+G + VEF S + +++GS D + +W+
Sbjct: 51 LNGHEGCVNAVEFNSTGDVLVSGSDDRQIMLWN 83
>At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Frame = +2
Query: 278 VCFRDAVHSY--SGGLDQTLKMYDLNAST-ETILGEHKGAIRCVEFASELNAVL-TGSWD 445
+C+ + S S + ++++D+ + T + EH+ + ++++S +L +GS D
Sbjct: 539 ICWNSYIKSQVASSNFEGVVQVWDVARNQLVTEMKEHEKRVWSIDYSSADPTLLASGSDD 598
Query: 446 GTVKMWDSRVPNCVGT 493
G+VK+W +GT
Sbjct: 599 GSVKLWSINQGVSIGT 614
>At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Frame = +2
Query: 278 VCFRDAVHSY--SGGLDQTLKMYDLNAST-ETILGEHKGAIRCVEFASELNAVL-TGSWD 445
+C+ + S S + ++++D+ + T + EH+ + ++++S +L +GS D
Sbjct: 539 ICWNSYIKSQVASSNFEGVVQVWDVARNQLVTEMKEHEKRVWSIDYSSADPTLLASGSDD 598
Query: 446 GTVKMWDSRVPNCVGT 493
G+VK+W +GT
Sbjct: 599 GSVKLWSINQGVSIGT 614
>At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4
WD-40 repeats (PF00400);low similarity to
photomorphogenesis repressor (COP1) GI:2702280
[Arabidopsis thaliana] and COP1 GI:11127996 [Ipomoea
nil]
Length = 343
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 377 HKGAIRCVEF-ASELNAVLTGSWDGTVKMWDSR 472
H + C+ S+ ++ TGS+D T+++WD+R
Sbjct: 209 HTMGVCCISSNPSDPYSIFTGSYDETLRVWDTR 241
>At5g58230.1 68418.m07290 WD-40 repeat protein (MSI1) contains 6
WD-40 repeats (PF0400); identical to WD-40 repeat
protein (SP:O22467) [Arabidopsis thaliana]
Length = 424
Score = 28.3 bits (60), Expect = 3.6
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Frame = +2
Query: 257 HELPVLDVCFRDAVHSY---SGGLDQTLKMYDLNASTET----ILGEHKGAIRCVEFASE 415
HE V DV + H Y S G DQ L ++DL + + + + H + C+ F +
Sbjct: 226 HEGVVEDVAWH-LRHEYLFGSVGDDQYLLIWDLRSPSASKPVQSVVAHSMEVNCLAF-NP 283
Query: 416 LN--AVLTGSWDGTVKMWDSR 472
N V TGS D TVK++D R
Sbjct: 284 FNEWVVATGSTDKTVKLFDLR 304
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 359 ETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPN 481
E IL H IR + ++ N +++G GT+K W + + N
Sbjct: 158 EMILQAHDQPIRSMVWSHNENYMVSGDDGGTLKYWQNNMNN 198
>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1102
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = +2
Query: 326 TLKMYDLN---ASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCVGTY 496
TLK++D+ + G +G I S+ + +LT + D WD+ V
Sbjct: 243 TLKLWDMRNIMSPVREFTGHQRGVIAMEWCPSDSSYLLTCAKDNRTICWDTNTAEIVAEL 302
Query: 497 NQGNN 511
GNN
Sbjct: 303 PAGNN 307
>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1104
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = +2
Query: 326 TLKMYDLN---ASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWDSRVPNCVGTY 496
TLK++D+ + G +G I S+ + +LT + D WD+ V
Sbjct: 243 TLKLWDMRNIMSPVREFTGHQRGVIAMEWCPSDSSYLLTCAKDNRTICWDTNTAEIVAEL 302
Query: 497 NQGNN 511
GNN
Sbjct: 303 PAGNN 307
>At3g13290.1 68416.m01673 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1322
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 365 ILGEHKGAIRCVEFASELNA-VLTGSWDGTVKMWDSR 472
I+G+H G + + + +++ S DGTVK+W R
Sbjct: 335 IVGKHDGEVTDLSMCQWMTTRLVSSSVDGTVKIWQDR 371
>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 793
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +2
Query: 320 DQTLKMYDLNAST-ETILGEHKGAIRCVEFASELNAVL-TGSWDGTVKMWDSRVPNCVGT 493
D T+K+ D IL H+ V F + ++ +GS D V++W+++ C+ T
Sbjct: 124 DHTVKIIDCETGKCLKILTGHRRTPWVVRFHPRHSEIVASGSLDHEVRLWNAKTGECIRT 183
Query: 494 YN 499
++
Sbjct: 184 HD 185
>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 790
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +2
Query: 320 DQTLKMYDLNAST-ETILGEHKGAIRCVEFASELNAVL-TGSWDGTVKMWDSRVPNCVGT 493
D T+K+ D IL H+ V F + ++ +GS D V++W+++ C+ T
Sbjct: 124 DHTVKIIDCETGKCLKILTGHRRTPWVVRFHPRHSEIVASGSLDHEVRLWNAKTGECIRT 183
Query: 494 YN 499
++
Sbjct: 184 HD 185
>At3g13300.2 68416.m01675 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1309
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 365 ILGEHKGAIRCVEFASELNA-VLTGSWDGTVKMWDSR 472
I+G+H G + + + +++ S DGT+K+W R
Sbjct: 316 IVGKHDGEVTDLSMCQWMTTRLVSSSVDGTIKIWQDR 352
>At3g13300.1 68416.m01674 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1344
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 365 ILGEHKGAIRCVEFASELNA-VLTGSWDGTVKMWDSR 472
I+G+H G + + + +++ S DGT+K+W R
Sbjct: 351 IVGKHDGEVTDLSMCQWMTTRLVSSSVDGTIKIWQDR 387
>At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family
protein / F-box family protein contains similarity to
F-box protein FBL2 GI:6010699 from [Rattus norvegicus];
contains Pfam profiles PF00514:
Armadillo/beta-catenin-like repeat, PF00646: F-box
domain
Length = 930
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 411 LNLMQYSQEAGMEQSKCGIAEFQTV 485
LNLMQ SQE E+S G+A F V
Sbjct: 395 LNLMQSSQEDVQERSATGLATFVVV 419
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 350 ASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
A T G HK ++ V+F + N L D ++K WD
Sbjct: 587 AVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKFWD 625
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 350 ASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
A T G HK ++ V+F + N L D ++K WD
Sbjct: 587 AVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKFWD 625
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 350 ASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
A T G HK ++ V+F + N L D ++K WD
Sbjct: 587 AVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKFWD 625
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 350 ASTETILGEHKGAIRCVEFASELNAVLTGSWDGTVKMWD 466
A T G HK ++ V+F + N L D ++K WD
Sbjct: 587 AVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKFWD 625
>At5g01400.1 68418.m00053 expressed protein contains low similarity
to symplekin SP:Q92797 from [Homo sapiens]
Length = 1467
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 407 ASELNAVLTGSWDGTVKMWDSRVPNCVGTYNQGNNG 514
+SELN +L SW +K D C + QGN+G
Sbjct: 125 SSELNDLLESSWTWLIKFKDE---ICSVAFKQGNSG 157
>At4g15215.1 68417.m02332 ABC transporter family protein similar to
PDR5-like ABC transporter [Spirodela polyrhiza]
GI:1514643; contains Pfam profile PF00005: ABC
transporter
Length = 1390
Score = 27.1 bits (57), Expect = 8.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 78 LWKQSCMGYKNTN*NYNRIIYL 13
LWKQ C ++N + N RI+++
Sbjct: 1121 LWKQHCSYWRNPSHNLTRIVFI 1142
>At3g52190.1 68416.m05731 transducin family protein / WD-40 repeat
family protein similar to St12p protein (GI:166878)
{Arabidopsis thaliana}; contains Pfam profile: PF00400
WD domain, G-beta repeat
Length = 398
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +2
Query: 311 GGLDQTLKMYDLNASTETILGEHKG--AIRCVEFASELNAVLTGSWDGTVKMW 463
GG+D L++ + + IL E K +IR ++F+ + + T S DG+ ++W
Sbjct: 140 GGVDGCLRIMEW-PNLSVILDEPKAHKSIRDMDFSLDSEFLATTSTDGSARIW 191
>At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50)
identical to DNA repair-recombination protein GI:7110148
from [Arabidopsis thaliana]
Length = 1316
Score = 27.1 bits (57), Expect = 8.3
Identities = 21/76 (27%), Positives = 33/76 (43%)
Frame = +3
Query: 24 FYYSFN*CFYTPYKIASTMTVTRVAESRTEFKLKSLPEDAISSVKFAPKSNQYLLVSSWD 203
F+Y+ TP+ + +T +SR L L D + KSN+ L ++WD
Sbjct: 377 FHYNLGNVPSTPFSTEVVLNLTNRIKSR----LGELEMDLLDK----KKSNETALSTAWD 428
Query: 204 CSVRLYDVTANIERHK 251
C + D +IE K
Sbjct: 429 CYMDANDRWKSIEAQK 444
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,157,541
Number of Sequences: 28952
Number of extensions: 243627
Number of successful extensions: 1058
Number of sequences better than 10.0: 166
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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