Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0266
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   5.5  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   5.5  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   5.5  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   9.6  

>SPMIT.03 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial||Partial|Manual
          Length = 323

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 430 SLKQLVSYNNNYKYLSRWYLKIVHYIKTY 344
           S K++++Y +NY  LS  Y+  + + K Y
Sbjct: 267 SAKKVINYFDNYHLLSSKYISYLKWRKAY 295


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 226  ECMGYTKWLRSVLVKTILAIICHDCCNKK 312
            EC+G    L S +V T+    C DCC+K+
Sbjct: 1482 ECVG----LSSDIVSTLSNYACPDCCSKE 1506


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -2

Query: 424  KQLVS-YNNNYKYLSRWYLKIVH 359
            KQ +  Y+ N KYL +W+  ++H
Sbjct: 2351 KQTIEEYSINKKYLMQWFASVIH 2373


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 284 IANIVLTKTDRSHFVYPIHSIVLQN 210
           ++ I L+KT  SH + P H + L+N
Sbjct: 428 VSEIPLSKTLTSHKIVPKHQVDLEN 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,968,573
Number of Sequences: 5004
Number of extensions: 35612
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)