Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0266
         (545 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0511 + 6678765-6678801,6678904-6679923,6680012-6680718           31   0.60 
05_03_0074 + 8095355-8096575,8096664-8096901,8096990-8097667,809...    30   1.0  
01_04_0017 - 15113479-15113580,15113950-15114117,15115011-151152...    30   1.0  
05_03_0071 - 8044217-8045142,8045303-8045411,8045634-8046854           29   1.8  
05_02_0073 + 6336649-6336710,6336846-6336894,6338079-6338468,633...    29   1.8  
05_05_0083 - 22259499-22259658,22259745-22260112,22260824-22261072     28   5.6  

>04_01_0511 + 6678765-6678801,6678904-6679923,6680012-6680718
          Length = 587

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
 Frame = +1

Query: 121 GIVSVIRLFSLYSYTLIHLLRQELIGYLNKFCNTI-----ECMGYTKWLRSVLVKTILAI 285
           G  +++++F  + +  +  +  E+ GY + FCN +     + +     L     K  L +
Sbjct: 392 GAQTMLQVFQSFEFVFLLHMMNEIFGYTSDFCNALLRREQDIVNAMDLLE--FTKAELDV 449

Query: 286 ICHDCCNKKFMTAATSF 336
           +  DC  K+F+   TSF
Sbjct: 450 LREDCGCKEFLGKVTSF 466


>05_03_0074 +
           8095355-8096575,8096664-8096901,8096990-8097667,
           8097787-8097974
          Length = 774

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
 Frame = +1

Query: 109 VGSPGIVSVIRLFSLYSYTLIHLLRQELIGYLNKFCNTIECMGYTKWLRSVLV---KTIL 279
           +G+  ++ V + F L    L+H++  E+ GY + FCN ++           L+   K  L
Sbjct: 525 IGAQTMLQVFQSFELVF--LLHMMN-EIFGYTSDFCNALQRREQDIVNAMDLLEFTKAEL 581

Query: 280 AIICHDCCNKKFMTAATSF 336
            ++  DC  K+F+   TSF
Sbjct: 582 DVLREDCGWKEFLGKVTSF 600


>01_04_0017 -
           15113479-15113580,15113950-15114117,15115011-15115229,
           15115303-15115446,15115558-15115840,15115936-15115991,
           15116067-15116216,15116299-15116385,15116463-15116498,
           15116746-15116808,15116887-15116967,15117053-15117142,
           15117349-15117426,15117510-15117731,15117788-15117835,
           15117948-15118133,15120910-15121009,15121107-15121246
          Length = 750

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 427 LKQLVSYNNNYKYLSRWYLKIVHYIKTYF 341
           L++LV   +N+K + RW  +  HY+  YF
Sbjct: 94  LRELVKRWSNHKVMVRWLSRFFHYLDRYF 122


>05_03_0071 - 8044217-8045142,8045303-8045411,8045634-8046854
          Length = 751

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = +1

Query: 121 GIVSVIRLFSLYSYTLIHLLRQELIGYLNKFCNTIEC--MGYTKWLRSV-LVKTILAIIC 291
           G  +++++F  + +  +  +  E+ GY + FCN ++         +  +   K    ++ 
Sbjct: 459 GAQTMLQVFQSFEFVFLLHMMNEIFGYTSDFCNALQRREQDIVNAMDILEFTKAEFDVLR 518

Query: 292 HDCCNKKFMTAATSF 336
            DC  K+F+   TSF
Sbjct: 519 EDCGWKEFLGKVTSF 533


>05_02_0073 +
           6336649-6336710,6336846-6336894,6338079-6338468,
           6338677-6338902,6338983-6339270,6339594-6339967,
           6340044-6340736
          Length = 693

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +1

Query: 127 VSVIRLFSLYSYTLIHLLRQELIGYLNKFCNTIECMG 237
           VSV    +++ +T+ H LR  +IG+  K  + I+C+G
Sbjct: 135 VSVEEQLAMFLHTVGHNLRNRVIGFFVKRSSEIDCIG 171


>05_05_0083 - 22259499-22259658,22259745-22260112,22260824-22261072
          Length = 258

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 148 SLYSYTLIHLLRQELIGYLNKFCNTIECMGYTKWLRSV 261
           ++YSY     +  ++  +L+ +    EC  Y  WLR V
Sbjct: 215 AVYSYLKSRCISTDITDFLHAYMINKECHEYLSWLRKV 252


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,000,885
Number of Sequences: 37544
Number of extensions: 177464
Number of successful extensions: 349
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)