Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0266
         (545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92782-3|CAB07189.2|  326|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z81541-4|CAD91634.1|  266|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AJ487543-1|CAD31791.1|  266|Caenorhabditis elegans farnesylated-...    27   8.8  

>Z92782-3|CAB07189.2|  326|Caenorhabditis elegans Hypothetical
           protein F14F8.4 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -1

Query: 332 LVAAVINFLLQQS*HIIANIVLTKTDRSHFVYPIHSIVLQN 210
           L    IN++LQQ+ H+I   +L   +   +++P +S+  QN
Sbjct: 104 LAGLYINYILQQTFHVIL-FLLAILNSLKYLFPFNSVYSQN 143


>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 191 NSCLNKCMRV*LYKENNLMTLTMPGDPTLATVQ 93
           NS + KC+RV L K    +T  +P D  L  V+
Sbjct: 63  NSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVE 95


>Z81541-4|CAD91634.1|  266|Caenorhabditis elegans Hypothetical
           protein F48F5.5 protein.
          Length = 266

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 160 YTLIHLLRQELIGYLNKFCNTIECMGYTKWLRSVLVKTILAIICHDCCN 306
           Y+L H + Q   G+  +FC T     +  WL+      I+ II H  CN
Sbjct: 176 YSLAHSILQR--GF--QFCYTYLFGAFATWLQLTTRHAIVPIIAHAFCN 220


>AJ487543-1|CAD31791.1|  266|Caenorhabditis elegans
           farnesylated-proteins convertingenzyme-2 protein.
          Length = 266

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 160 YTLIHLLRQELIGYLNKFCNTIECMGYTKWLRSVLVKTILAIICHDCCN 306
           Y+L H + Q   G+  +FC T     +  WL+      I+ II H  CN
Sbjct: 176 YSLAHSILQR--GF--QFCYTYLFGAFATWLQLTTRHAIVPIIAHAFCN 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,738,612
Number of Sequences: 27780
Number of extensions: 196924
Number of successful extensions: 321
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)