Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0265
(727 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 66 5e-12
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo... 61 2e-10
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 32 0.073
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces... 30 0.39
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 27 2.1
SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.8
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 26 6.3
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 25 8.3
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 66.1 bits (154), Expect = 5e-12
Identities = 33/75 (44%), Positives = 41/75 (54%)
Frame = +1
Query: 484 RASNGSQCKGIPDFWYNIFRNVSMLSEMMPEHDEPILKCLQDIKVPMHEDPISFTLGIYF 663
+ G KGIP+FW +NV LSEM+ DE L L DI++ E P F L F
Sbjct: 154 KQEGGDDTKGIPEFWLTAMKNVLSLSEMITPEDEGALSHLVDIRISYMEKP-GFKLEFEF 212
Query: 664 APNEYFTNTVLTKEY 708
A N +FTN +LTK Y
Sbjct: 213 AENPFFTNKILTKTY 227
Score = 31.9 bits (69), Expect = 0.096
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 171 LHAEAMASLPPNVRRRIRALRTLQKEFVTLRPSFTVKYMH-SNANMKNFTSLFMK 332
L +E ++ LP V+RRI LR LQK + L F + A K + +F +
Sbjct: 63 LTSEGVSELPEAVQRRISGLRGLQKRYSDLESQFQKELFELEKAYAKKYAPIFKR 117
>SPBC2D10.11c |||nucleosome assembly protein Nap2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 60.9 bits (141), Expect = 2e-10
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +1
Query: 508 KGIPDFWYNIFRNVSMLSEMMPEHDEPILKCLQDIK-VPMHEDPISFTLGIYFAPNEYFT 684
KGIP+FW NV ++ EM+ DE +L+ L DI+ + D + L F N+YFT
Sbjct: 164 KGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSDIRFTNLSGDVHGYKLEFEFDSNDYFT 223
Query: 685 NTVLTKEYLMK 717
N +LTK Y K
Sbjct: 224 NKILTKTYYYK 234
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 32.3 bits (70), Expect = 0.073
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Frame = -1
Query: 607 LASILELVHHVLASFR*ALRHS*ICCTKSLGYPYIGIH-WRLDSLVILLFLTLSDGSI-- 437
LAS++ V +A F +L +S T L Y G+ + + ++ ILLF ++ G++
Sbjct: 628 LASVMYYVAEQVAFF--SLGNSNSLATVDLSQAYTGLDSYNIFAVGILLFTSVFAGALWW 685
Query: 436 -LYRPS*LFFFSVITPWVETFIIIRFIC 356
L++P + SV T W+ + I + F+C
Sbjct: 686 CLHQPKRMMDRSVKTFWIMSSISLTFLC 713
>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 29.9 bits (64), Expect = 0.39
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +1
Query: 508 KGIPDFWYNIFRNVS-MLSEMMPEHDEPILKCLQDIKVPM--HEDPISFTLGIYFAPNEY 678
K I +FW + +S+ + D +L+ L++I V ++P + + F PNEY
Sbjct: 44 KTINNFWVVVLEAAGDEISQYITPEDSVLLEKLENIYVERFNEKEPRDVRISLTFQPNEY 103
Query: 679 F--TNTVLTKEYLMK 717
N L KE +K
Sbjct: 104 LQDDNLTLVKEVRIK 118
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 162 TNRLHAEAMASLPPNVRRRIRALRTLQKEFVTLRPS 269
++++ + A+A LPP+++ I+ LQK +T PS
Sbjct: 693 SSQISSSALAQLPPSMQSDIQQQLRLQKRSITEYPS 728
>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 26.2 bits (55), Expect = 4.8
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 186 MASLPPNVRRRIRALRTLQKEFVTLRPSFTVKYMHSNANMKNFTSLFM 329
MA LPP RI + + ++L F KY+ N N+ N +F+
Sbjct: 190 MAILPPMAALRILFYQYSKASTMSLTDDFYNKYVLENLNIINNLQIFL 237
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 114 HLLKSGVTRNEMIAAITNRLHAEAMASLP 200
HLL++ T +E AA +LH + + S P
Sbjct: 1596 HLLRNSATNDETKAAFVYQLHKQGILSEP 1624
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 25.4 bits (53), Expect = 8.3
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +3
Query: 123 KSGVTRNEMIAAITNRLHAEAMASLPPNVRRRIRALRTLQKEFVTLRPSFTVKYMHSNAN 302
K +T NE + N + + S N +R++ R QK+F+ P+F + +
Sbjct: 620 KDALTINEFFT-LKNAVEKQDNVSFHVNKKRKVSQKREKQKKFLYDEPTFKKEASPHSDV 678
Query: 303 MKN 311
+KN
Sbjct: 679 LKN 681
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,528
Number of Sequences: 5004
Number of extensions: 57439
Number of successful extensions: 168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -