Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0265
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255... 71 7e-13
05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031... 69 4e-12
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071... 67 1e-11
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746... 64 8e-11
04_04_0122 - 22918146-22918220,22918455-22918496,22918586-229186... 58 5e-09
02_04_0344 - 22171401-22171448,22171725-22171760,22171996-221720... 50 2e-06
07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262... 29 3.8
07_03_1756 - 29239137-29239325,29239741-29240259,29240693-292408... 29 5.0
02_01_0051 - 385738-385968,386439-386864 29 5.0
12_01_0109 + 853043-853426,853653-853787,853866-854138 28 6.6
>06_01_0356 +
2557127-2557193,2557272-2557315,2557433-2557528,
2559259-2559351,2559450-2559540,2559617-2559678,
2559754-2559938,2560022-2560199,2560293-2560336,
2560440-2560635,2560728-2560745,2560955-2561005
Length = 374
Score = 71.3 bits (167), Expect = 7e-13
Identities = 33/72 (45%), Positives = 43/72 (59%)
Frame = +1
Query: 499 SQCKGIPDFWYNIFRNVSMLSEMMPEHDEPILKCLQDIKVPMHEDPISFTLGIYFAPNEY 678
+ KG+PDFW + +LSE + E DEP LK L+DIK +DP F L +F N +
Sbjct: 129 ADAKGVPDFWLTAMKTNEVLSEEIQERDEPALKYLKDIKWARIDDPKGFKLDFFFDTNPF 188
Query: 679 FTNTVLTKEYLM 714
F N+VLTK Y M
Sbjct: 189 FKNSVLTKTYHM 200
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 174 HAEAMASLPPNVRRRIRALRTLQ 242
H + + +L PNVR+R+ LR +Q
Sbjct: 47 HTDVLEALSPNVRKRVEYLREIQ 69
>05_06_0234 -
26602660-26602728,26602814-26602988,26603077-26603120,
26603204-26603381,26603468-26603652,26603737-26603801,
26603985-26604066,26604342-26604434,26605096-26605191,
26605312-26605355,26605467-26605530
Length = 364
Score = 68.9 bits (161), Expect = 4e-12
Identities = 33/69 (47%), Positives = 42/69 (60%)
Frame = +1
Query: 508 KGIPDFWYNIFRNVSMLSEMMPEHDEPILKCLQDIKVPMHEDPISFTLGIYFAPNEYFTN 687
KG+P+FW N +N +LSE + E DE LK L+DIK +P F L YF N +F N
Sbjct: 129 KGVPEFWLNAMKNHEILSEEIQERDEEALKYLKDIKWYRISEPKGFKLEFYFDTNPFFKN 188
Query: 688 TVLTKEYLM 714
+VLTK Y M
Sbjct: 189 SVLTKTYHM 197
>06_03_0740 -
24006485-24006629,24006821-24006864,24006954-24007122,
24007226-24007413,24007572-24007634,24007992-24008084,
24009837-24009932,24010024-24010067,24010184-24010357,
24010764-24010974
Length = 408
Score = 67.3 bits (157), Expect = 1e-11
Identities = 33/72 (45%), Positives = 43/72 (59%)
Frame = +1
Query: 499 SQCKGIPDFWYNIFRNVSMLSEMMPEHDEPILKCLQDIKVPMHEDPISFTLGIYFAPNEY 678
S+ KG+PDFW N +N +L+E + E DE LK L+DIK +DP F +F N +
Sbjct: 205 SKEKGVPDFWLNAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKGFKFEFFFYTNPF 264
Query: 679 FTNTVLTKEYLM 714
F N VLTK Y M
Sbjct: 265 FKNQVLTKTYHM 276
>01_06_0465 -
29573972-29574110,29574300-29574343,29574434-29574602,
29574707-29574894,29575081-29575145,29575257-29575311,
29575502-29575594,29576035-29576130,29576259-29576302,
29576419-29576431
Length = 301
Score = 64.5 bits (150), Expect = 8e-11
Identities = 31/69 (44%), Positives = 40/69 (57%)
Frame = +1
Query: 508 KGIPDFWYNIFRNVSMLSEMMPEHDEPILKCLQDIKVPMHEDPISFTLGIYFAPNEYFTN 687
KG+PDFW +N +L+E + E DE LK L+DIK +DP F +F N +F N
Sbjct: 103 KGVPDFWLKAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKGFKFEFFFDTNPFFKN 162
Query: 688 TVLTKEYLM 714
VLTK Y M
Sbjct: 163 QVLTKTYHM 171
>04_04_0122 -
22918146-22918220,22918455-22918496,22918586-22918642,
22918784-22918844,22919219-22919280,22919372-22919485,
22919565-22919636,22919824-22919874,22919990-22920112,
22921261-22921383
Length = 259
Score = 58.4 bits (135), Expect = 5e-09
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +1
Query: 508 KGIPDFWYNIFRNVSMLSEMMPEHDEPILKCLQDIKVPMHEDPIS-FTLGIYFAPNEYFT 684
K IPDFW F + ML E++ E D+ I K L+ I V ED S +++ + F+PN YF
Sbjct: 73 KQIPDFWLTAFLSHPMLGELLTEDDQKIFKHLESIDVDDSEDIKSGYSITLTFSPNPYFE 132
Query: 685 NTVLTKEY 708
+T LTK Y
Sbjct: 133 DTKLTKTY 140
>02_04_0344 -
22171401-22171448,22171725-22171760,22171996-22172056,
22173246-22173304,22173384-22173497,22173575-22173646,
22173786-22173836,22173935-22174057,22175154-22175291
Length = 233
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +1
Query: 514 IPDFWYNIFRNVSMLSEMMPEHDEPILKCLQDIKVPMHEDPIS-FTLGIYFAPNEYFTNT 690
IPDFW F + +LSE++ E D+ + K L+ + V +D S +++ + F+ N YF +
Sbjct: 80 IPDFWLTAFLSHPLLSELLTEEDQKMFKYLESVDVDDSKDVKSGYSITLTFSENPYFEDK 139
Query: 691 VLTKEY 708
LTK Y
Sbjct: 140 ELTKTY 145
>07_03_1626 +
28223967-28225294,28225506-28225779,28225939-28226230,
28226492-28226651,28226809-28226917,28227004-28227099
Length = 752
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +2
Query: 398 DDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVRVSQTFGTTYSGMS 550
DD EEEE + V I EG + ++ +A P D F Y G S
Sbjct: 169 DDVEEEEEEQVVSRLDIFEGAKGREARAFLPDEDDEDDDVVVFDPEYDGYS 219
>07_03_1756 -
29239137-29239325,29239741-29240259,29240693-29240800,
29240856-29241155,29241730-29241831,29243042-29243209,
29243878-29243991,29244184-29244288,29244372-29244502,
29244794-29244918,29245001-29245172,29245277-29245316,
29245636-29245722,29245803-29245868,29246412-29246510,
29246714-29246836,29247066-29247107,29247195-29247260,
29247362-29247553,29247672-29247737,29248839-29249141
Length = 1038
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 338 ALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGE 460
A IV + EPN + N +D+T E+ A +NAA+T +
Sbjct: 685 AAIVTASEEPNGGDSANKLKDETMEDP---ATENAAMTNAD 722
>02_01_0051 - 385738-385968,386439-386864
Length = 218
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = +2
Query: 440 AAITEGEEKKDDKAIEPPMDPNVRVSQTFGTTYSGMSQCSAK*CQNMMNQF*NACKILKC 619
AA E EK + +PP P V GT +G ++C+ + + + +++ C
Sbjct: 87 AAAAEDPEKPPVQEADPPPPPPALVYSAAGTKLAGAAECAICLAEFVDG---DTVRVMPC 143
Query: 620 QCMKTP 637
C + P
Sbjct: 144 WCQEIP 149
>12_01_0109 + 853043-853426,853653-853787,853866-854138
Length = 263
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 195 GMPSLLHEGDL*WPLSFHYGSRHFSTGVALVHHFXXXXXXLQTP 64
G+P L GD+ + L+F G+ H T VAL F Q+P
Sbjct: 129 GVPDLSEHGDV-YDLTFGLGADHPPTAVALRKEFQRIILYQQSP 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,745,994
Number of Sequences: 37544
Number of extensions: 372840
Number of successful extensions: 1031
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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