Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0265
         (727 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)              86   2e-17
SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.41 
SB_20513| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_30442| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   3.8  
SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)                 29   5.1  
SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)             28   6.7  
SB_49774| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)                    28   8.9  
SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3)                28   8.9  

>SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 42/85 (49%), Positives = 52/85 (61%), Gaps = 12/85 (14%)
 Frame = +1

Query: 508 KGIPDFWYNIFRNVSMLSEMMPEHDEPILKCLQDIKVPM------------HEDPISFTL 651
           KGIP+FW    +NV +LSEM+ EHDEPILK L D++V                 P+ F L
Sbjct: 238 KGIPEFWLTAMKNVELLSEMIQEHDEPILKHLHDVRVIFTGPESTNTTQYPQPTPMGFVL 297

Query: 652 GIYFAPNEYFTNTVLTKEYLMKCKP 726
             +F PN +FTNTVLTK Y MKC+P
Sbjct: 298 EFHFTPNPFFTNTVLTKSYKMKCEP 322



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 24/68 (35%), Positives = 30/68 (44%)
 Frame = +2

Query: 251 CHIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDTEEEELARA 430
           C +E KFY EVHA               R  I +G  EP D+EC   W  D E+E+ A  
Sbjct: 143 CKLEGKFYEEVHALECKYAEKFKPFYEKRRNIASGGVEPTDEEC--RWPSDAEDEDEAEE 200

Query: 431 VQNAAITE 454
            +    TE
Sbjct: 201 KEEKEATE 208


>SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1718

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 22/95 (23%), Positives = 38/95 (40%)
 Frame = +2

Query: 338 ALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVRVS 517
           A+I +    P D   +   +D  + +  A     A I+   ++KD       +D NV +S
Sbjct: 247 AIISDSMRHPEDMSTMRETQDQKQTDPAANGSSEATISNDSDRKDANIRFSDIDKNVNIS 306

Query: 518 QTFGTTYSGMSQCSAK*CQNMMNQF*NACKILKCQ 622
            + G      SQ S K   + M +  +  K L  +
Sbjct: 307 DSQGENIHVDSQSSKKTQDSEMEEVKDPSKSLSLE 341


>SB_20513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -2

Query: 639 YGVFMHWH-FNILQAF*NWFIMFWH 568
           +G+FMHW  F++      WF  FWH
Sbjct: 59  FGIFMHWGVFSVPSFGSEWFWKFWH 83


>SB_30442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +3

Query: 153 AAITNRLHAEAMASLPPNVRRRIRALRTLQKEFVTLRPSFTVKYMHSNANMKNF 314
           AA T + H E     PPN+R R   L T  K   +LR S  V    +  + +NF
Sbjct: 28  AASTLKPHYEKSLP-PPNIRPRSSRLSTSTKRIQSLRSSLLVNSSFAKNSYRNF 80


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 305  HICIRVHVLHCKTWPQCDKLLLK 237
            HI +RV V  C+  P C+K LLK
Sbjct: 3390 HIALRVEVYGCRLGPLCNKPLLK 3412


>SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1900

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +2

Query: 404  TEEEELARAVQNA--AITEGEEKKDDKAIEPPMDPNVRVSQTFGTTYSGMSQCSAK 565
            TE E++   ++N    + E EEK+D +       PN+R+ + FG   S  S+   K
Sbjct: 1840 TEIEDIHTIIKNIHQMMKEREEKEDKETKSSDKKPNIRIGKPFGRPSSFGSKTDDK 1895


>SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)
          Length = 667

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 198 VGMPSLLHEGDL*WPLSFHYGSRHFSTGVALVH 100
           V +PS +HE D   PL F +GS +  T + L H
Sbjct: 207 VPLPSSIHEADDMLPLCFEFGSLNSQTLLMLEH 239


>SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)
          Length = 365

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 356 TYEPNDDECLNPWRDDTEEEEL 421
           TYE  D+ C +PW+D +++ E+
Sbjct: 268 TYERLDNSCTSPWQDVSQKSEV 289


>SB_49774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 552

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 305 HICIRVHVLHCKTWPQCDKLLLK 237
           HIC  V  +HCK+  QC  LL K
Sbjct: 116 HICRDVDDIHCKSEAQCQALLNK 138


>SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)
          Length = 601

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 359 YEPNDDECLNPWRDD-TEEEELARAVQNAAITE 454
           +  N D+C+N   +  T + EL R +QNAA TE
Sbjct: 468 HNANSDDCINNRGEPYTTKAELVRILQNAAETE 500


>SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3)
          Length = 477

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -1

Query: 418 LFFFSVITPWVETFIIIRFICAIHNKSSLFIKRLVKFFIFAFECMYF 278
           LFF   +T    +F +  FI   +     F K +   F++ F CMYF
Sbjct: 13  LFFLLFLTV---SFHVFMFIVVPYVTKRPFFKNIPAIFMYIFMCMYF 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,748,420
Number of Sequences: 59808
Number of extensions: 445482
Number of successful extensions: 1190
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)