Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0265
(727 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta... 69 4e-12
At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta... 68 7e-12
At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta... 64 1e-10
At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) famil... 50 1e-06
At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) famil... 46 3e-05
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 32 0.45
At2g26530.1 68415.m03183 expressed protein 32 0.45
At1g67140.1 68414.m07638 expressed protein 32 0.45
At4g03620.1 68417.m00497 myosin heavy chain-related contains wea... 30 1.8
At5g40840.2 68418.m04959 cohesion family protein SYN2 (SYN2) ide... 28 7.2
At5g40840.1 68418.m04958 cohesion family protein SYN2 (SYN2) ide... 28 7.2
At4g10410.1 68417.m01709 hypothetical protein 28 7.2
>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 372
Score = 68.5 bits (160), Expect = 4e-12
Identities = 33/69 (47%), Positives = 41/69 (59%)
Frame = +1
Query: 508 KGIPDFWYNIFRNVSMLSEMMPEHDEPILKCLQDIKVPMHEDPISFTLGIYFAPNEYFTN 687
KG+P FW +N ++SE + E DE LK L+DIK E+P F L +F N YF N
Sbjct: 125 KGVPSFWLTALKNNDVISEEVTERDEGALKYLKDIKWCKIEEPKGFKLEFFFDTNPYFKN 184
Query: 688 TVLTKEYLM 714
TVLTK Y M
Sbjct: 185 TVLTKSYHM 193
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 177 AEAMASLPPNVRRRIRALRTLQKEFVTLRPSF 272
++ + +L PNVR+R+ ALR +Q + L F
Sbjct: 41 SDVLENLTPNVRKRVDALRDIQSQHDELEAKF 72
>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 379
Score = 67.7 bits (158), Expect = 7e-12
Identities = 33/69 (47%), Positives = 41/69 (59%)
Frame = +1
Query: 508 KGIPDFWYNIFRNVSMLSEMMPEHDEPILKCLQDIKVPMHEDPISFTLGIYFAPNEYFTN 687
KG+PDFW +N + +E + E DE LK L+DIK E+P F L +F N YF N
Sbjct: 124 KGVPDFWLIALKNNEITAEEITERDEGALKYLKDIKWSRVEEPKGFKLEFFFDQNPYFKN 183
Query: 688 TVLTKEYLM 714
TVLTK Y M
Sbjct: 184 TVLTKTYHM 192
>At5g56950.1 68418.m07109 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 374
Score = 63.7 bits (148), Expect = 1e-10
Identities = 31/69 (44%), Positives = 40/69 (57%)
Frame = +1
Query: 508 KGIPDFWYNIFRNVSMLSEMMPEHDEPILKCLQDIKVPMHEDPISFTLGIYFAPNEYFTN 687
KG+P FW +N ++SE + E DE L L+DIK E+P F L +F N YF N
Sbjct: 124 KGVPSFWLTALKNNDVISEEITERDEGALIYLKDIKWCKIEEPKGFKLEFFFDQNPYFKN 183
Query: 688 TVLTKEYLM 714
T+LTK Y M
Sbjct: 184 TLLTKAYHM 192
>At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) family
protein similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 329
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = +1
Query: 508 KGIPDFWYNIFRNVSMLSEMMPEHDEPILKCLQDIKVPMHEDPI-SFTLGIYFAPNEYFT 684
+G+P+FW + ML+ + E DE LK L+DI+ ED +F L F N YF
Sbjct: 126 EGVPNFWLIAMKTNEMLANEITERDEAALKYLKDIRSCRVEDTSRNFKLEFLFDSNLYFK 185
Query: 685 NTVLTKEY 708
N+VL+K Y
Sbjct: 186 NSVLSKTY 193
>At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) family
protein similar to SP|Q01105|SET protein (HLA-DR
associated protein II) (PHAPII) (Phosphatase 2A
inhibitor I2PP2A) {Homo sapiens}; contains Pfam profile
PF00956: Nucleosome assembly protein (NAP)
Length = 256
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +1
Query: 508 KGIPDFWYNIFRNVSMLSEMMPEHDEPILKCLQDIKVPMHEDPIS-FTLGIYFAPNEYFT 684
K IPDFW F + L E++ E D+ I K L + V +D S +++ F PN +F
Sbjct: 71 KTIPDFWLTAFLSHPALGELLTEEDQKIFKYLSSLDVEDAKDVKSGYSITFSFNPNPFFE 130
Query: 685 NTVLTKEY 708
+ LTK +
Sbjct: 131 DGKLTKTF 138
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 31.9 bits (69), Expect = 0.45
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +2
Query: 398 DDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVRVSQTFGTTYSGMSQ 553
DD +EEE + + +I E EEK D +E P D N++ + T Y+ S+
Sbjct: 43 DDDDEEEAVSELNSLSIKE-EEKPDS-ILEEPEDSNIKAVTSGDTPYTSASR 92
>At2g26530.1 68415.m03183 expressed protein
Length = 317
Score = 31.9 bits (69), Expect = 0.45
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +3
Query: 243 KEFVTLRPSFTVKYMHSNANMKNFTSLFMKSEXXXXXXXXXXXXXNVSTHGVMTLKKKS 419
K+F+ R + + H+ ++K FTSLF K E +VS H + KK+
Sbjct: 238 KDFLLFRSASEGRARHNKDSVKTFTSLFRKQEDTKNSSSRGRGSSSVSAHEFHYMSKKA 296
>At1g67140.1 68414.m07638 expressed protein
Length = 2158
Score = 31.9 bits (69), Expect = 0.45
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Frame = -1
Query: 640 LWGLHALAL*YLASILELVHHVLASFR*ALRHS*ICCTKSLGYPYI--GIHWRLDSLVIL 467
+W LH L L A+ L V HV A+ AL I T+ G+ + GI ++++V +
Sbjct: 816 IWALHGLLLTIEAAGLSFVSHVQAALGLALD---ILLTEESGWIDLSQGIGRLINAIVAV 872
Query: 466 LFLTLSDGSILYRPS*LFFFSVITPWVETFIIIRFICA 353
L LS GSIL+ + I+ W E ++ ++ A
Sbjct: 873 LGPELSPGSILFSRC-KSVIAEISSWQEIPTLLEYVNA 909
>At4g03620.1 68417.m00497 myosin heavy chain-related contains weak
similarity to Swiss-Prot:P24733 myosin heavy chain,
striated muscle [Aequipecten irradians]
Length = 342
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +2
Query: 359 YEPND-DECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNV 508
+E N+ +E ++ +R + E+L + VQN A+ +EKK+D P D NV
Sbjct: 199 HELNEMEELVSDFR--AQNEKLLKKVQNCAVEHNKEKKEDIDGPGPGDNNV 247
>At5g40840.2 68418.m04959 cohesion family protein SYN2 (SYN2)
identical to cohesion family protein SYN2 [Arabidopsis
thaliana] GI:12006360; supporting cDNA
gi|12006359|gb|AF281154.1|AF281154
Length = 810
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 407 EEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVRVSQ 520
+ E +R QNA+ + + DD +EP M ++R++Q
Sbjct: 217 DSNEPSRDHQNASRHREDPESDDILLEPQMSEDIRIAQ 254
>At5g40840.1 68418.m04958 cohesion family protein SYN2 (SYN2)
identical to cohesion family protein SYN2 [Arabidopsis
thaliana] GI:12006360; supporting cDNA
gi|12006359|gb|AF281154.1|AF281154
Length = 809
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 407 EEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVRVSQ 520
+ E +R QNA+ + + DD +EP M ++R++Q
Sbjct: 217 DSNEPSRDHQNASRHREDPESDDILLEPQMSEDIRIAQ 254
>At4g10410.1 68417.m01709 hypothetical protein
Length = 263
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Frame = +1
Query: 562 EMMPEHDEPILKCLQDIKVPMHEDPI--SFTL---GIYFAPNE 675
E+ E + L+C D +P+H P+ SF L G+YF P +
Sbjct: 34 ELYSESEFKSLQCFLDRNLPLHRAPVIESFRLELSGLYFNPED 76
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,082,604
Number of Sequences: 28952
Number of extensions: 300421
Number of successful extensions: 909
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -