Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0263
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.11 |dpm2||dolichol-phosphate mannosyltransferase subun...    27   2.1  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    27   3.6  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   3.6  
SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr 1|||M...    26   4.8  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    26   4.8  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    26   6.3  
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        25   8.3  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    25   8.3  

>SPBC21B10.11 |dpm2||dolichol-phosphate mannosyltransferase subunit
           2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 72

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 522 ILISTATLFILTTLWINTYPFLDEDSAVYELIPNPKWVL 638
           + ISTA  F+  T+W+   PF+D  +   +L  + +W +
Sbjct: 3   VYISTAA-FLYYTIWVLIMPFVDNMNISQKLFLDREWAI 40


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1095

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +3

Query: 504  CSVGKFILISTATLFILTTLWINTYPFL-DEDSAVY 608
            C + +F       L  + T WINT P   DED A Y
Sbjct: 981  CKICRFCSQRVQDLDKVVTYWINTLPVTHDEDDAPY 1016


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 514 PTLHQECPYTYIF*YNYVIQLQNNSF 437
           P +    PYT++  Y Y   + NNS+
Sbjct: 450 PAIPPNVPYTFVDPYTYACYINNNSY 475


>SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
 Frame = +3

Query: 270 KKLLVLSEPAADPN------IVEKIIQRAKKQKPLLENTEVKKGKEKSILFPEEKQSFQD 431
           +KLL  +  +AD N       ++   +R K+ + LL     K   ++ +L PEE +  Q+
Sbjct: 35  RKLLEEANSSADENDSHSMATIKSHFERLKRDEQLLNGVLKKYDAKQEVLSPEELRDAQN 94

Query: 432 F 434
           F
Sbjct: 95  F 95


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 675 PLGGTAPKQRRIVEPTLDLGSIHKQQ 598
           P G T P++R  +EPT      H++Q
Sbjct: 369 PSGATTPRRRDSMEPTYASNEAHRRQ 394


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 258 DQNIKKLLVLSEPAADPNIVEKIIQRAKKQKPLL 359
           D N+K+     E ++  N+ E +++R KK  P+L
Sbjct: 385 DHNVKRYGKSEESSSTMNVGEGLLKRTKKYIPIL 418


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 176 RGLQVKQFLIHTKVEVEKRTTQLMIIS*PEYK-KVASSFRTCSRSQY 313
           + L+VKQFL++  V +E+ T    + S   Y+ K+A   R  +  +Y
Sbjct: 231 KALRVKQFLVNQTVSLEEGTLADAVESLKVYQTKIARILREENEDEY 277


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -3

Query: 316 TILGSAAGSERTSNFFIFWSTYYH*LCCSFFHF--YFCMDEELLDLQTSNVSY 164
           T+LG     +    FF+ +S+ +  +C SFF +    C+++ +  ++ +N+ Y
Sbjct: 126 TLLGLPLARQVFRQFFVLFSSDFLMICLSFFSYGLQVCIEKNM--IRWANLGY 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,007,316
Number of Sequences: 5004
Number of extensions: 61888
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)