Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0263
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70204-3|CAA94113.1|  385|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U50308-2|AAG24028.1|  791|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z81526-7|CAB04266.2|  330|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AY661556-1|AAV70493.1|  714|Caenorhabditis elegans acetylcholine...    29   3.4  
AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical ...    29   3.4  
AF078786-4|AAC26944.4|  714|Caenorhabditis elegans Sodium:neurot...    29   3.4  
Z70284-10|CAB54279.1|  351|Caenorhabditis elegans Hypothetical p...    28   5.9  
Z68751-2|CAA92972.2|  193|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z70204-3|CAA94113.1|  385|Caenorhabditis elegans Hypothetical
           protein C11G6.3 protein.
          Length = 385

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 318 EKIIQRAKKQKPLLENTEVKKGKEKSILFPEEKQSFQDFEKE 443
           EK  +  KKQK LL+  E  + KEK      EK+  ++ E+E
Sbjct: 194 EKRREEKKKQKELLKEKERSERKEKERELEREKEKSREKERE 235


>U50308-2|AAG24028.1|  791|Caenorhabditis elegans Hypothetical
           protein F07C3.3 protein.
          Length = 791

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 388 KNPSFSLKKNNHF--KTLKKNCFVAELHNYIKKYMYMDIP 501
           + P  ++ KN+ F  KTL+ N FV   +N+ KK +  ++P
Sbjct: 222 RKPERNMTKNSMFIKKTLEVNAFVINCYNHSKKAVKPEVP 261


>Z81526-7|CAB04266.2|  330|Caenorhabditis elegans Hypothetical
           protein F33H2.8 protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/46 (26%), Positives = 27/46 (58%)
 Frame = +3

Query: 519 FILISTATLFILTTLWINTYPFLDEDSAVYELIPNPKWVLLFCAVW 656
           ++L+S + +F++  L+ + +  L    +VY ++ N + +L  CA W
Sbjct: 255 YVLMSLSFIFMICNLYSHLWLTLSLSPSVYLVLENSRNLLASCAQW 300


>AY661556-1|AAV70493.1|  714|Caenorhabditis elegans
           acetylcholine/choline transporter protein.
          Length = 714

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +3

Query: 507 SVGKFILISTATLFILTTLWINTYPFLDEDSAVYELIPNPKW-VLLFCAVWG 659
           S GK + ++    FI+ T+ +     LD   A       PKW +L+   VWG
Sbjct: 283 SSGKVVYVAVIVPFIILTVLLTRLLTLDGSLAAVFYFLTPKWEILMDLHVWG 334


>AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical
            protein Y71A12B.4 protein.
          Length = 1913

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
 Frame = +3

Query: 522  ILISTATLFILTTLWINTYPFLDEDSAVYELIPNPKWVL--LFCAVWGLFLLRGLMVLHP 695
            + ++  TL + T+++   Y  +DEDSA    + +P   L  LF +++GL     +  LH 
Sbjct: 1643 LFVAGFTLHV-TSIFQPAYQPVDEDSAELMRLASPSQTLEMLFFSLFGLVEPDSMPPLHL 1701

Query: 696  VPTFTLI 716
            VP F  I
Sbjct: 1702 VPDFAKI 1708


>AF078786-4|AAC26944.4|  714|Caenorhabditis elegans
           Sodium:neurotransmitter symporterfamily protein 6
           protein.
          Length = 714

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +3

Query: 507 SVGKFILISTATLFILTTLWINTYPFLDEDSAVYELIPNPKW-VLLFCAVWG 659
           S GK + ++    FI+ T+ +     LD   A       PKW +L+   VWG
Sbjct: 283 SSGKVVYVAVIVPFIILTVLLTRLLTLDGSLAAVFYFLTPKWEILMDLHVWG 334


>Z70284-10|CAB54279.1|  351|Caenorhabditis elegans Hypothetical
           protein K07F5.12 protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 439 FSKS*NDCFSSGKRMDFSLPFFTSVFSSKGFCFLALCII 323
           + K  N    S +  D+  PF+TSVF      F A C+I
Sbjct: 220 YLKQQNPPTDSFQVFDYIFPFYTSVFLFSTLYFFAYCVI 258


>Z68751-2|CAA92972.2|  193|Caenorhabditis elegans Hypothetical
           protein T05E11.2 protein.
          Length = 193

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -3

Query: 451 QNNSFSKS*NDCFSSGKRMDFSLPFFTSVFSSKGFCFLALCIIFSTILGS 302
           +  S ++   DCF      DF L     + +S G C LA+C    TI  S
Sbjct: 57  EGGSHTQPSRDCFG-----DFELASIILISASLGCCILAICFAICTIFTS 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,393,995
Number of Sequences: 27780
Number of extensions: 342629
Number of successful extensions: 1059
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)