Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0263
(726 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g15030.2 68416.m01902 TCP family transcription factor, putati... 30 1.8
At3g15030.1 68416.m01901 TCP family transcription factor, putati... 30 1.8
At1g09060.2 68414.m01011 transcription factor jumonji (jmjC) dom... 29 2.4
At1g09060.1 68414.m01010 transcription factor jumonji (jmjC) dom... 29 2.4
At1g14710.2 68414.m01759 hydroxyproline-rich glycoprotein family... 29 3.1
At1g14710.1 68414.m01758 hydroxyproline-rich glycoprotein family... 29 3.1
At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protei... 28 5.5
At1g74340.1 68414.m08611 dolichol phosphate-mannose biosynthesis... 28 5.5
At3g32910.1 68416.m04167 hypothetical protein similar to At2g152... 28 7.2
At1g20670.1 68414.m02589 DNA-binding bromodomain-containing prot... 28 7.2
At3g07980.1 68416.m00975 protein kinase, putative similar to MAP... 27 9.6
At2g42760.1 68415.m05295 expressed protein 27 9.6
At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit, ... 27 9.6
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 27 9.6
>At3g15030.2 68416.m01902 TCP family transcription factor, putative
similar to TCP3 GB:AAC24010 [Arabidopsis thaliana]
Length = 420
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Frame = -3
Query: 682 ISPLRRNSPQTAQNSRTHFGFGINS*TAESSSKNGYVFIQRVVKINRVAVEININFPTL- 506
ISP Q Q + FG G N AE S N F+ + + +A I FP +
Sbjct: 133 ISPSPPPPQQQQQQQQLQFGVGFNGGGAEHPSNNESSFLPPSMDSDSIADTIKSFFPVIG 192
Query: 505 -HQECPYTYIF*YNY 464
E P + +NY
Sbjct: 193 SSTEAPSNHNLMHNY 207
>At3g15030.1 68416.m01901 TCP family transcription factor, putative
similar to TCP3 GB:AAC24010 [Arabidopsis thaliana]
Length = 420
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Frame = -3
Query: 682 ISPLRRNSPQTAQNSRTHFGFGINS*TAESSSKNGYVFIQRVVKINRVAVEININFPTL- 506
ISP Q Q + FG G N AE S N F+ + + +A I FP +
Sbjct: 133 ISPSPPPPQQQQQQQQLQFGVGFNGGGAEHPSNNESSFLPPSMDSDSIADTIKSFFPVIG 192
Query: 505 -HQECPYTYIF*YNY 464
E P + +NY
Sbjct: 193 SSTEAPSNHNLMHNY 207
>At1g09060.2 68414.m01011 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam domain, PF02373:
jmjC domain
Length = 930
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 318 EKIIQRAKKQKPLLENTEVKKGKEKSILFPEEK 416
E +R +K KP+ E + K + +S+L PE+K
Sbjct: 667 ETTFERVRKTKPVPEEPDQKMSENESLLSPEQK 699
>At1g09060.1 68414.m01010 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam domain, PF02373:
jmjC domain
Length = 930
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 318 EKIIQRAKKQKPLLENTEVKKGKEKSILFPEEK 416
E +R +K KP+ E + K + +S+L PE+K
Sbjct: 667 ETTFERVRKTKPVPEEPDQKMSENESLLSPEQK 699
>At1g14710.2 68414.m01759 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 601
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +3
Query: 288 SEPAADPNIVEKIIQRAKKQKPLLENTEVKKGKEKSILFPEEKQSFQDFE 437
SE + VEK ++ ++ Q+ +++N + G + + L E+KQ D E
Sbjct: 186 SEKPRSDSKVEKKLEESETQEEIVKNHKCNSGSKDNSLISEQKQEENDKE 235
>At1g14710.1 68414.m01758 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 601
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +3
Query: 288 SEPAADPNIVEKIIQRAKKQKPLLENTEVKKGKEKSILFPEEKQSFQDFE 437
SE + VEK ++ ++ Q+ +++N + G + + L E+KQ D E
Sbjct: 186 SEKPRSDSKVEKKLEESETQEEIVKNHKCNSGSKDNSLISEQKQEENDKE 235
>At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protein
similar to SP|Q05022 rRNA biogenesis protein RRP5
{Saccharomyces cerevisiae}; contains Pfam profile
PF00575: S1 RNA binding domain
Length = 1838
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -3
Query: 232 SFFHFYFCMDEELLDLQTSNVS 167
SF YF MDE++ DLQ+S+++
Sbjct: 748 SFVQEYFLMDEKISDLQSSDIT 769
>At1g74340.1 68414.m08611 dolichol phosphate-mannose biosynthesis
regulatory protein-related similar to dolichol
phosphate-mannose biosynthesis regulatory protein
SP:Q9Z324 from [Mus musculus]
Length = 80
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +3
Query: 522 ILISTATLFILT--TLWINTYPFLDEDSAVYELIPNPKWVLLFCAVWGLFLL 671
+L+S+ +L I T T W+ PF+D D +++ + +L G+ LL
Sbjct: 10 LLLSSISLSIFTYYTFWVIILPFVDSDHFIHKYFLPQDYAILVPVFAGIALL 61
>At3g32910.1 68416.m04167 hypothetical protein similar to At2g15200,
At2g04970, At1g32830, At2g14140, At4g03990
Length = 377
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/35 (31%), Positives = 24/35 (68%)
Frame = +3
Query: 327 IQRAKKQKPLLENTEVKKGKEKSILFPEEKQSFQD 431
++R KK+K +++ + KGK+K ++ +++ SF D
Sbjct: 121 VKRKKKEKWWIKDNQTLKGKQKKDVWIDKEMSFID 155
>At1g20670.1 68414.m02589 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 652
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 336 AKKQKPLLENTEVKKGKEKSILFPEEKQSFQDFEKEL 446
A++Q+P + N +++ LFP KQ F F +L
Sbjct: 586 ARQQQPNVSNEATPVSQQQGSLFPYPKQEFHRFPPDL 622
>At3g07980.1 68416.m00975 protein kinase, putative similar to MAP3K
epsilon protein kinase [Arabidopsis thaliana]
gi|3549652|emb|CAA12272
Length = 1367
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 267 IKKLLVLSEPAADPNIVEKIIQRAKKQKPLLENTEVKKG 383
+K L + + DPN +E + QRA K L+ N E+K+G
Sbjct: 1090 LKILECTNHLSTDPNCLENL-QRADAIKQLIPNLELKEG 1127
>At2g42760.1 68415.m05295 expressed protein
Length = 267
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +3
Query: 318 EKIIQRAKKQKPLLENTEVKKGKEKSILFPEEKQSFQD 431
EK QR KK+K N +KGK S L EE + F D
Sbjct: 125 EKEEQRKKKKKK--SNVRTRKGKSMSDLEYEELKGFMD 160
>At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit,
putative similar to gi:2827141 cellulose synthase
catalytic subunit, Arabidopsis thaliana (Ath-A)
Length = 1088
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 549 ILTTLWINTYPFLDEDSAVYEL 614
ILT LW+ PF+ +D V E+
Sbjct: 1060 ILTLLWVRVNPFVSKDGPVLEI 1081
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +3
Query: 294 PAADPNIVEKIIQRAKKQKPLLENTEV----KKGKEKSILFPEEKQSFQDFEKELF 449
P + +K ++ KP+ +++ V K GK K ++ P+E Q DFE+ LF
Sbjct: 510 PEGETEESDKSKLKSSSTKPVADSSGVSEPLKSGKTK-VVAPKETQDNDDFERTLF 564
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,190,359
Number of Sequences: 28952
Number of extensions: 307764
Number of successful extensions: 795
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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