Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0262
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50197-4|AAA91257.1|  443|Caenorhabditis elegans Intermediate fi...    28   5.9  

>U50197-4|AAA91257.1|  443|Caenorhabditis elegans Intermediate
           filament, d protein 2 protein.
          Length = 443

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = -1

Query: 537 SYIKAVYKTGKI*KKRV-VQISRERRDSNQFIVKLKTKEKPLHNACSSNLISPSG*CFLV 361
           SYIK +    +  K RV  +ISR R D  + +  L+ KE+  H++ S  L+     C   
Sbjct: 173 SYIKRLTTDCEEEKSRVHSEISRLRSDIKR-VHALRDKERSKHSSSSQELLKRLNGCISQ 231

Query: 360 QKLASSYDYSRAAHHDT 310
             +A   + S+A    T
Sbjct: 232 HDIAIREEISKARRDTT 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,283,929
Number of Sequences: 27780
Number of extensions: 279916
Number of successful extensions: 446
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)