Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0262
         (732 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g32169.1 68418.m03692 hypothetical protein                          27   9.7  
At3g11130.1 68416.m01349 clathrin heavy chain, putative similar ...    27   9.7  
At3g08530.1 68416.m00990 clathrin heavy chain, putative similar ...    27   9.7  
At1g78815.1 68414.m09187 expressed protein contains Pfam profile...    27   9.7  

>At5g32169.1 68418.m03692 hypothetical protein
          Length = 258

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -1

Query: 273 LYMFDLKVMFLLSFKT*HCVILIFI 199
           LY+F ++ ++L+SF   H VI++ +
Sbjct: 215 LYLFSIQFLYLISFTVVHSVIILLL 239


>At3g11130.1 68416.m01349 clathrin heavy chain, putative similar to
           Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
           sapiens]
          Length = 1705

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
 Frame = -1

Query: 540 FSYIKAVYKTGKI*KKRVVQISRE-----RRDSNQFIVKLKTKE-KPLHNAC 403
           F YI+A  KTG+I  K V +++RE        +  F+++ K  + +PL N C
Sbjct: 743 FKYIEAAAKTGQI--KEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVC 792


>At3g08530.1 68416.m00990 clathrin heavy chain, putative similar to
           Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
           sapiens]
          Length = 1703

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
 Frame = -1

Query: 540 FSYIKAVYKTGKI*KKRVVQISRE-----RRDSNQFIVKLKTKE-KPLHNAC 403
           F YI+A  KTG+I  K V +++RE        +  F+++ K  + +PL N C
Sbjct: 743 FKYIEAAAKTGQI--KEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVC 792


>At1g78815.1 68414.m09187 expressed protein contains Pfam profile
           PF04852: Protein of unknown function (DUF640)
          Length = 195

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 477 SRERRDSNQFIVKLKTKEKPLH-NACSSNLI 388
           S++RRD N F   L+ ++ P+H + C SN I
Sbjct: 43  SQKRRDWNTFCQYLRNQQPPVHISQCGSNHI 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,022,278
Number of Sequences: 28952
Number of extensions: 243021
Number of successful extensions: 395
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)