Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0260
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    27   3.4  
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    26   4.5  
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    26   4.5  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    26   6.0  

>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +3

Query: 234 KNSEVNKYGSMNAGFNVTHLTALSRELSVPIFVCRLHFILILMHIVYCLKL 386
           KN EV  + S+    +  +      E+  PI +    FIL+L+ ++YC K+
Sbjct: 94  KNFEVKDFLSIWINESFINENRFYSEIWGPIAIYICLFILLLLGLIYCSKI 144


>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 234 KNSEVNKYGSMNAGFNVTHLTALSRELSVPIFVCRLHFILILMHIVYCLKL 386
           KN EV  + S+    +  +      E+  PI +    F+L+L+ ++YC K+
Sbjct: 94  KNFEVKDFLSIWINESFINENRFYSEIWGPIAIYICLFVLLLLGLIYCSKI 144


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 234 KNSEVNKYGSMNAGFNVTHLTALSRELSVPIFVCRLHFILILMHIVYCLKL 386
           KN EV  + S+    +  +      E+  PI +    F+L+L+ ++YC K+
Sbjct: 94  KNFEVKDFLSIWINESFINENRFYSEIWGPIAIYICLFVLLLLGLIYCSKI 144


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 358 NIRIKCNLQTKIGTLNSLDNAVK*VTLNPAFID 260
           NIR+K N + +I  ++ L N V+   ++P F+D
Sbjct: 503 NIRVKDNKRYQIPVISLLCNFVRSSGMDPTFLD 535


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,787,242
Number of Sequences: 5004
Number of extensions: 57207
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)