Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0260
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8124| Best HMM Match : Ribosomal_L16 (HMM E-Value=0.55)             28   6.3  
SB_22679| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   8.4  

>SB_8124| Best HMM Match : Ribosomal_L16 (HMM E-Value=0.55)
          Length = 285

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 151 VHYSPYGNIILKTTSISKLLMLNLYK 74
           +H+S +GN  L  T I K+ +  LYK
Sbjct: 102 LHFSAFGNFTLAKTEIKKIALKALYK 127


>SB_22679| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 894

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -2

Query: 670 LNRWKQFFKLCFKQDGAPYFYPPNLKHNTC*SSRNKINTIFMLH 539
           LN+W + + L + +DGA + Y P L          + N++  +H
Sbjct: 674 LNQWVKSYTLAYSRDGALFQYLPKLLSGNKDRDTVEFNSVGKIH 717


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,543,664
Number of Sequences: 59808
Number of extensions: 392285
Number of successful extensions: 568
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)