Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0260
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66500-4|CAA91305.2|  630|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AC006748-2|AAF60515.2|  215|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z66500-4|CAA91305.2|  630|Caenorhabditis elegans Hypothetical
           protein T05C12.4 protein.
          Length = 630

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = +3

Query: 237 NSEVNKYGSMNAGFNVTHLTALSRELSVPIFVCRLHFILILMHIVYCL 380
           N+E+    S++   N+T+ +  SR L   +F+CRL F  + + +++ +
Sbjct: 403 NAEIPSDNSLSYNPNLTYFSLHSRLL---VFICRLAFCFVALALLFVI 447


>AC006748-2|AAF60515.2|  215|Caenorhabditis elegans Hypothetical
           protein Y39A3B.3 protein.
          Length = 215

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 378 DNIQYALISE*NVIYRQK*VHLTPSITQLNEL 283
           DN +Y + S   + +++K  + TP  +QLN+L
Sbjct: 128 DNFKYLIFSNYKIQFQKKTYNKTPGASQLNDL 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,183,554
Number of Sequences: 27780
Number of extensions: 315712
Number of successful extensions: 489
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)