Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0260
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.1  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   3.7  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   6.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.5  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 396 PTYSSYSTSGMNVTPSTQ*SCHVNVSVCLPKITSIF 503
           P Y    T  MN+  ST+   +   + C+ K T IF
Sbjct: 458 PNYIDKETKDMNLEISTRPKSNTVENACVLKNTEIF 493


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 693 WYYVWKIN*TDGNS 652
           WY  WK+   DGN+
Sbjct: 210 WYKGWKVERKDGNA 223


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/31 (22%), Positives = 16/31 (51%)
 Frame = +3

Query: 237 NSEVNKYGSMNAGFNVTHLTALSRELSVPIF 329
           N+  N Y +    +N+ ++  +   + VPI+
Sbjct: 315 NNNYNNYNNKKLYYNINYIEQIPVPVPVPIY 345


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 112 TSISKLLMLNLYKN 71
           TSI+ LL+LNL +N
Sbjct: 546 TSIASLLLLNLSEN 559


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,599
Number of Sequences: 438
Number of extensions: 4098
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)