Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0259
(792 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07) 49 4e-06
SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12) 46 5e-05
SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 5e-05
SB_39560| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00055) 44 1e-04
SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037) 41 0.001
SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021) 40 0.002
SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.028
SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18) 35 0.066
SB_21610| Best HMM Match : HSF_DNA-bind (HMM E-Value=0.32) 33 0.20
SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_2854| Best HMM Match : TUDOR (HMM E-Value=0.00033) 31 0.81
SB_39138| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_47583| Best HMM Match : SAP (HMM E-Value=8.9e-08) 31 1.1
SB_32949| Best HMM Match : SAP (HMM E-Value=1) 31 1.1
SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_4080| Best HMM Match : zf-C3HC4 (HMM E-Value=0.23) 30 2.5
SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_39219| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39) 28 7.5
SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 10.0
SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
SB_35110| Best HMM Match : LRR_1 (HMM E-Value=3.9e-09) 28 10.0
SB_15057| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
>SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
Length = 617
Score = 49.2 bits (112), Expect = 4e-06
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +3
Query: 300 GECVICLEELSAGDTIARLPCLCIYHKGCIDQWFEVNRSCPEH 428
GECVICL+E G T+ LPC +H+ CI+ W + + P H
Sbjct: 558 GECVICLDEFKPGCTLLGLPCGHSFHQHCIEVWLAGDNTAPHH 600
>SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 46.0 bits (104), Expect = 4e-05
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +3
Query: 294 SKGECVICLEELSAGDTIARLPCLCIYHKGCIDQWFEVNRSCP 422
S C ICL + G++ ++PC ++H GCI W E SCP
Sbjct: 58 STSSCPICLGDYEKGESTKQMPCDHLFHPGCILPWLEKTNSCP 100
>SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)
Length = 558
Score = 45.6 bits (103), Expect = 5e-05
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +3
Query: 285 LSDSKGECVICLEELSAGDTIARLPCLCIYHKGCIDQWFEVNRSCP 422
+++ +CVICLE G + +PC +HK C+D W N +CP
Sbjct: 207 VTEKNPKCVICLEGFKNGQDLRIVPCRHEFHKECVDPWLLSNFTCP 252
>SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 402
Score = 45.6 bits (103), Expect = 5e-05
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 306 CVICLEELSAGDTIARLPCLCIYHKGCIDQWF-EVNRSCP 422
C ICL+E GD + LPC YH C+D W E R+CP
Sbjct: 301 CAICLDEYKEGDKLRILPCDHAYHCKCVDPWLTEGKRTCP 340
>SB_39560| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00055)
Length = 545
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +3
Query: 237 SRNVPDR-PRLSYNEDVLSDSKGECVICLEELSAGDTIARLPCLCIYHKGCIDQWFEVNR 413
S+ V DR P ++ S G CV+C+ + + + + +LPC +H CID+W + R
Sbjct: 337 SKEVIDRIPSFRFSASNKDMSNGSCVVCMMDYTNREKLRKLPCNHDFHSKCIDRWLKAFR 396
Query: 414 S 416
+
Sbjct: 397 A 397
>SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)
Length = 303
Score = 41.1 bits (92), Expect = 0.001
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 306 CVICLEELSAGDTIARLPCLCIYHKGCIDQWFE-VNRSCP 422
C+IC+EE + GD++ LPC +H CI W + CP
Sbjct: 257 CLICMEEYAVGDSMKYLPCRHNFHSACIRTWLTYTSCKCP 296
>SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)
Length = 358
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 276 EDVLSDSKGECVICLEELSAGDTIARLPCLCIYHKGCIDQWFE 404
E + CV+CL + + LPCL YH CID+W +
Sbjct: 283 ESKKQNDDARCVVCLVDFEEKQLVRTLPCLHEYHTRCIDKWLK 325
>SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 36.3 bits (80), Expect = 0.028
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +3
Query: 306 CVICLEELSAGDTIARLPCLCIYHKGCIDQWFEVNRSCP 422
C +CL + +L C ++H+ CID W CP
Sbjct: 212 CGVCLSAYHPLQYVRKLQCRHVFHRDCIDSWLATQSICP 250
>SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18)
Length = 398
Score = 35.1 bits (77), Expect = 0.066
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 306 CVICLEELSAGDTIARLPCLCIYHKGCIDQWFEVNRSCP 422
C ICLEE + L C Y + C+ +W E N +CP
Sbjct: 262 CPICLEEFTPETPTRLLVCGHKYCEPCLSRWLENNTTCP 300
>SB_21610| Best HMM Match : HSF_DNA-bind (HMM E-Value=0.32)
Length = 425
Score = 33.5 bits (73), Expect = 0.20
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 181 GIKCPVCSKFVLPDDIECHLVMCL 252
GIKCPVC + D IE HLV C+
Sbjct: 400 GIKCPVCDEIFPHDQIEEHLVDCV 423
>SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1122
Score = 31.5 bits (68), Expect = 0.81
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 106 CFEMGQAFGTTNSHNGERNYARKEIGIKCPVCSK-FVLPDDIECHLV 243
C G++FG S+N + +K++ +C C K FV+P HLV
Sbjct: 1066 CKLCGKSFGRLWSYNKHKQLHKKQLVYECAFCRKGFVIPSLYARHLV 1112
>SB_2854| Best HMM Match : TUDOR (HMM E-Value=0.00033)
Length = 359
Score = 31.5 bits (68), Expect = 0.81
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -2
Query: 506 FFLLIFTMPSGFTVCLSALDGAL---VAGVLRTRPVHFEP 396
++ L+F +PSGF CLS +D L V G T + F P
Sbjct: 3 YYPLVFQVPSGFLSCLSRIDSNLRSKVEGFFSTEFITFPP 42
>SB_39138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 624
Score = 31.5 bits (68), Expect = 0.81
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +3
Query: 285 LSDSKGECVICLEELSAGDTIARLPC-LC--IYHKGCIDQWFEVNRSC 419
L+ C +CL+ + A RLPC LC I+H C+ +E++R C
Sbjct: 218 LNPGPTNCAVCLKGIRARQP--RLPCHLCEQIFHLKCLGAEYELSRCC 263
>SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +3
Query: 246 VPDRPRLSYNEDVLSDSKGECVICLEELSAGDTIARLPCLCIYHKGCIDQWFEV 407
VPD +S N+D + +C +CL LS C+ ++ CI +W ++
Sbjct: 83 VPD-VNISDNDDATMSNSAQCPVCLMSLSEQKLGTPNSCMHVFCLECILEWSKI 135
>SB_47583| Best HMM Match : SAP (HMM E-Value=8.9e-08)
Length = 407
Score = 31.1 bits (67), Expect = 1.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 187 KCPVCSKFVLPDDIECHLVMCLT 255
+CPVC + +L + HL +CLT
Sbjct: 64 ECPVCGELILQSKVNSHLDLCLT 86
>SB_32949| Best HMM Match : SAP (HMM E-Value=1)
Length = 269
Score = 31.1 bits (67), Expect = 1.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 187 KCPVCSKFVLPDDIECHLVMCLT 255
+CPVC + +L + HL +CLT
Sbjct: 142 ECPVCGELILQSKVNSHLDLCLT 164
>SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -3
Query: 142 NSSYRTLDPSQNNITALRSR-NNKCNKNKIDHTS 44
N+S R D ++NN ++ R+ NN N NK DH+S
Sbjct: 24 NNSSRNNDKNRNNNSSSRNNDNNNNNDNKSDHSS 57
>SB_4080| Best HMM Match : zf-C3HC4 (HMM E-Value=0.23)
Length = 203
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 327 LSAGDTIARLPCLCIYHKGCIDQWFEVNRSCPEH 428
+S +I+ PC+ + C QW E +R CP +
Sbjct: 70 MSDSFSISLQPCMHSFCASCYSQWMEHSRDCPSN 103
>SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 838
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = -3
Query: 370 MQRHGRRAIVSPADSSSRHITHSPFESLRTSSL*DRRGLSGTLRDGTLCRPVKRTCCTPD 191
+ R+GR ++S D S+ IT P++ L L GLS ++ + + C D
Sbjct: 104 VNRNGRLTMLSVDDLSTTKITPGPYDHLNLDGLIFIGGLSVNTKNKVRIKALNYRGCLSD 163
Query: 190 ILY 182
I++
Sbjct: 164 IVF 166
>SB_39219| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1951
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +3
Query: 276 EDVLSDS-KGECVICLEELSAGDTIARLPCLCIYHKGCIDQWFEVNRSCP 422
+ +LSD G C++ L I LC HK CI Q N+ CP
Sbjct: 227 DGLLSDMLPGGCILVLNTADVQQHILPWTTLCALHKNCI-QPTGANKDCP 275
>SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)
Length = 2865
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 252 DRPRLSYNEDVLSDSKGECVICLEELSAGDTIARLPCLCIYHK 380
D +L ++++SD+ E V L G RL C+ IY++
Sbjct: 894 DEIKLIVRDNIVSDTLNEKVSFFASLEVGGFTGRLSCIQIYYR 936
>SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 928
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +1
Query: 106 CFEMGQAFGTTNSHNGERNYARKEIGIKCPVCSK-FVLPDDIECHLVMCLTG 258
C GQ F + ++ R E +C C K FV D++ H+ +C TG
Sbjct: 734 CLTCGQTFRSRSNLLYHERRHRGEAPFECQTCGKVFVRSDNLSKHM-LCHTG 784
>SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1442
Score = 27.9 bits (59), Expect = 10.0
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +3
Query: 303 ECVICLEELSAGDTIARLPCLCIYHKGCIDQW 398
EC++C++ I L C C + C+ Q+
Sbjct: 1004 ECIVCMDLKPENRMITMLNCQCRFCSDCVSQY 1035
>SB_35110| Best HMM Match : LRR_1 (HMM E-Value=3.9e-09)
Length = 546
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +3
Query: 228 RVPSRNVPDRPRLSYNEDVLSD--SKGE 305
RVPSR+ P+ YNEDV D S GE
Sbjct: 263 RVPSRSHSVTPKSQYNEDVREDVRSSGE 290
>SB_15057| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +3
Query: 228 RVPSRNVPDRPRLSYNEDVLSD--SKGE 305
RVPSR+ P+ YNEDV D S GE
Sbjct: 70 RVPSRSHSVTPKSQYNEDVREDVRSSGE 97
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,899,413
Number of Sequences: 59808
Number of extensions: 407023
Number of successful extensions: 1376
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1373
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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