Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0258
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom... 29 0.63
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 28 1.4
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 28 1.4
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.5
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 26 4.4
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce... 26 4.4
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 26 4.4
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 4.4
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 25 7.7
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 7.7
>SPBC776.07 |||mitochondrial Mam33 family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 29.1 bits (62), Expect = 0.63
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +3
Query: 297 KALHTKGE--RELVEFLTEEIVAERKA--QKVKSLPAEVEGFTVKGDGAEVVLTKQLKDE 464
++ HT G +L+ L+ EI E+ ++ P + V+G A VVL + DE
Sbjct: 49 RSSHTAGNPRSKLINALSSEIDYEKNQVLSEISLPPVNYDIEDVQGS-AVVVLKAKHGDE 107
Query: 465 TIRVTFNVNHTV 500
IR+T NV+ V
Sbjct: 108 NIRITMNVSQDV 119
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 27.9 bits (59), Expect = 1.4
Identities = 20/49 (40%), Positives = 25/49 (51%)
Frame = +3
Query: 312 KGERELVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEVVLTKQLK 458
K ERE+ E L E+ K V +LPA V T KGD + LTK +
Sbjct: 146 KSEREVAEKLANELEKSDKTVFVNNLPARV--VTNKGDYKD--LTKHFR 190
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 27.9 bits (59), Expect = 1.4
Identities = 21/74 (28%), Positives = 29/74 (39%)
Frame = +3
Query: 204 AHELLSKVRWDPGFHQLLHNHSNTCSCGCGLKALHTKGERELVEFLTEEIVAERKAQKVK 383
A E + K + G H+LL L K ERE+ E EIV K+
Sbjct: 99 ASENIEKETYVQGSHELLVARKKIALYSLEKAKLRLKKEREISEIPVPEIVLSGKSSIEH 158
Query: 384 SLPAEVEGFTVKGD 425
AE+ G + G+
Sbjct: 159 LQKAELMGSQIGGE 172
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 2.5
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -3
Query: 508 SESTV*LTLNVTRIVSSLSCFVKTT-SAPSPFTVKPSTSAGRDLTFCALRSATISSVRNS 332
S S +LN T ++ S + +T S+ +P T ST+A SAT SS + +
Sbjct: 224 SSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSA------SATSSSAQYN 277
Query: 331 TSSLSP 314
TSSL P
Sbjct: 278 TSSLLP 283
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -3
Query: 466 VSSLSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNST 329
V+ LS K+ S V S+++G ++ + SA ISS++NST
Sbjct: 1347 VNMLSHKRKSASTSDRRFVNASSTSGMNMPISSSISAKISSIQNST 1392
>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 544
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 175 VKRD-FTRGIWHMSCSRRLDGTLASTSFYTTIPIL 276
VK D F RG WH+ +++G A +PIL
Sbjct: 433 VKEDEFKRGPWHLGKFSKINGYAACAFVLLMVPIL 467
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = -2
Query: 641 RWILKIGAGENQGWCLLGLGQPQTEVWNASQRTLASQSEHH 519
+W K+ ENQ W ++ + + Q + S R S+S +
Sbjct: 100 KWFQKVSKNENQSWMIVLVAEAQQAKRSNSLRRTHSRSSSY 140
>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -2
Query: 476 DTNCFIFKLLC*NNFSTVSLYSKAFDFSRERL--DLLCFAFSNYFFCQELY 330
+TN F++ + C + TVSL S A + D +C+ + N EL+
Sbjct: 15 ETNDFLYLMRCCYMYDTVSLVSNAPNIYSIPFFYDRICYDYKNILLKYELF 65
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 603 PLVFTCSYLQDPPAASADEYNDVF 674
P +C+YLQ+P S +EY F
Sbjct: 115 PAFTSCAYLQNPVVDSNNEYESKF 138
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.4 bits (53), Expect = 7.7
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = -3
Query: 529 LNITLKVSESTV*LTLNVTRIVSSLSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATI 350
LN + ++ STV +N + ++S S +T S V STS + T
Sbjct: 2382 LNSSTPITSSTV---VNTSTPITSSSVLNSSTPITSSTVVNTSTSITSSSVLNSSTPITS 2438
Query: 349 SSVRNSTSSLS 317
SSV NS++ ++
Sbjct: 2439 SSVLNSSTPIT 2449
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,700,046
Number of Sequences: 5004
Number of extensions: 53469
Number of successful extensions: 185
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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