Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0258
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1354 - 26337628-26338540,26339638-26339981 32 0.37
04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019 30 1.5
05_01_0446 - 3551754-3551795,3551932-3552397,3552424-3552921,355... 29 2.6
03_06_0072 - 31469595-31469684,31469762-31469848,31469968-314700... 29 2.6
06_03_1512 - 30688098-30688133,30688401-30688537,30688744-306888... 29 3.4
11_06_0553 - 24920428-24921057,24921149-24921276,24921372-249214... 29 4.5
10_08_0438 + 17919355-17919391,17919491-17919544,17919928-179201... 29 4.5
03_06_0554 + 34691050-34691242,34691327-34691394,34691754-34692275 29 4.5
10_08_0078 + 14699588-14700645,14700739-14700874,14701076-14701096 28 6.0
03_01_0369 - 2863159-2863491,2864149-2864214,2865045-2865140,286... 28 7.9
>08_02_1354 - 26337628-26338540,26339638-26339981
Length = 418
Score = 32.3 bits (70), Expect = 0.37
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -3
Query: 430 APSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSLSP 314
+PSP T PST+ GRD C R + + N +L+P
Sbjct: 168 SPSPATRSPSTTLGRDRYCCLTREDIVRFLINCLGALAP 206
>04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019
Length = 508
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +3
Query: 327 LVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEVVLTKQL 455
LV F+ ++ E K + ++ L E+E F + +G+EV L++ +
Sbjct: 461 LVGFIFTLLLPESKGKSLEDLTGEIEEFQEEDEGSEVALSRPI 503
>05_01_0446 -
3551754-3551795,3551932-3552397,3552424-3552921,
3553288-3553334
Length = 350
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 492 HTVDSETLRVMFRLRSKSSLRCV-PNLSLRLT 584
H + E L +MFR RS S +C+ P+ LR T
Sbjct: 170 HELTVENLNIMFRARSSSKAQCITPSQRLRQT 201
>03_06_0072 -
31469595-31469684,31469762-31469848,31469968-31470036,
31470117-31470185,31470269-31471306
Length = 450
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = -3
Query: 442 KTTSAPSPFTVKPSTSA-GRDLTFCALRSATISSVRNSTSSLSPFV*SAFNPQ---PQLQ 275
++ + +P PS+ A G + F + + V S+ S SP + SAFNP P LQ
Sbjct: 103 RSCATKAPVNDPPSSLAIGLLMVFTSGMGSATGRVGASSLSASPSISSAFNPAALLPFLQ 162
Query: 274 VLEWL 260
+WL
Sbjct: 163 ATKWL 167
>06_03_1512 -
30688098-30688133,30688401-30688537,30688744-30688834,
30689265-30690815
Length = 604
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = -3
Query: 334 STSSLSPFV*SAFNPQPQLQVLEWLCRSWWKPGSHLTFESSSCAIY 197
+TSS + + ++ +PQPQ L RS +PG+ L ++ C+ Y
Sbjct: 2 ATSSTATIIAASSSPQPQPLFLLLRLRSRARPGARLRAAAARCSSY 47
>11_06_0553 -
24920428-24921057,24921149-24921276,24921372-24921409,
24921522-24921734,24921906-24921998,24922089-24922276,
24922396-24922502,24922614-24922775,24922870-24922953,
24923060-24923168,24923340-24923468,24923504-24923556,
24923654-24923759,24924082-24924189
Length = 715
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = -3
Query: 541 LLLSLNITLKVSESTV*LTLNVTRIVSSLSCFVKTTSAPSPFTV 410
L LSL+++L +S S + L L + ++ L+CF T PSP TV
Sbjct: 4 LTLSLSLSLSISFSFLELELCIDGHLAPLNCFPLT---PSPLTV 44
>10_08_0438 +
17919355-17919391,17919491-17919544,17919928-17920186,
17920396-17920484,17920645-17920775,17920900-17920946,
17921029-17921137,17921217-17921303,17921521-17921692,
17921837-17922309,17922402-17922463,17922537-17922639,
17923535-17923636
Length = 574
Score = 28.7 bits (61), Expect = 4.5
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = +3
Query: 303 LHTKGER-ELVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEVVLTKQLKDETIRVT 479
LH+ E+ E+V+ + E++ KV A + GF V+G+ V +TK KDET+
Sbjct: 397 LHSDQEKDEIVKPMEEDV-------KVIEKTATMRGFKVEGEDIPV-MTKVPKDETLDSR 448
Query: 480 FNVNHTVDSETLRVMFRLRS 539
H + ++ L V L+S
Sbjct: 449 DETCHVIYTQNLVVKSILQS 468
>03_06_0554 + 34691050-34691242,34691327-34691394,34691754-34692275
Length = 260
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -2
Query: 659 FISRSCRWILKIGAGENQGWCLLGLGQ-PQTEVWNASQRTLASQSEHH 519
F + CR+ + A NQ WC G G+ P ++ A +R A++++ H
Sbjct: 214 FAAEFCRFEENLAADRNQRWCGSGAGESPVYQIRTAPER--AARTKRH 259
>10_08_0078 + 14699588-14700645,14700739-14700874,14701076-14701096
Length = 404
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = -2
Query: 638 WILKIGAGENQGWCLLGLGQPQTEVWNASQRTLASQSEHHPQSLR 504
W L + + W +L L EV++ S + EHHP+ R
Sbjct: 356 WRLAVVHPVSVSWLVLSLSGRAAEVYDLSNSMKFTSHEHHPKEAR 400
>03_01_0369 -
2863159-2863491,2864149-2864214,2865045-2865140,
2865530-2865632,2865771-2865838,2866570-2866712,
2867050-2867242,2867602-2867640,2867742-2867807,
2868617-2869651
Length = 713
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 442 KTTSAPSPFTVKPSTSAGRDLTFCALRSATISS 344
+ + PS + + + GR LTF LRSA +S+
Sbjct: 41 RADACPSAVALADAAAGGRALTFAELRSAVLST 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,798,958
Number of Sequences: 37544
Number of extensions: 368841
Number of successful extensions: 1018
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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