SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0258
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1354 - 26337628-26338540,26339638-26339981                       32   0.37 
04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019           30   1.5  
05_01_0446 - 3551754-3551795,3551932-3552397,3552424-3552921,355...    29   2.6  
03_06_0072 - 31469595-31469684,31469762-31469848,31469968-314700...    29   2.6  
06_03_1512 - 30688098-30688133,30688401-30688537,30688744-306888...    29   3.4  
11_06_0553 - 24920428-24921057,24921149-24921276,24921372-249214...    29   4.5  
10_08_0438 + 17919355-17919391,17919491-17919544,17919928-179201...    29   4.5  
03_06_0554 + 34691050-34691242,34691327-34691394,34691754-34692275     29   4.5  
10_08_0078 + 14699588-14700645,14700739-14700874,14701076-14701096     28   6.0  
03_01_0369 - 2863159-2863491,2864149-2864214,2865045-2865140,286...    28   7.9  

>08_02_1354 - 26337628-26338540,26339638-26339981
          Length = 418

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 430 APSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSLSP 314
           +PSP T  PST+ GRD   C  R   +  + N   +L+P
Sbjct: 168 SPSPATRSPSTTLGRDRYCCLTREDIVRFLINCLGALAP 206


>04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019
          Length = 508

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +3

Query: 327 LVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEVVLTKQL 455
           LV F+   ++ E K + ++ L  E+E F  + +G+EV L++ +
Sbjct: 461 LVGFIFTLLLPESKGKSLEDLTGEIEEFQEEDEGSEVALSRPI 503


>05_01_0446 -
           3551754-3551795,3551932-3552397,3552424-3552921,
           3553288-3553334
          Length = 350

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 492 HTVDSETLRVMFRLRSKSSLRCV-PNLSLRLT 584
           H +  E L +MFR RS S  +C+ P+  LR T
Sbjct: 170 HELTVENLNIMFRARSSSKAQCITPSQRLRQT 201


>03_06_0072 -
           31469595-31469684,31469762-31469848,31469968-31470036,
           31470117-31470185,31470269-31471306
          Length = 450

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = -3

Query: 442 KTTSAPSPFTVKPSTSA-GRDLTFCALRSATISSVRNSTSSLSPFV*SAFNPQ---PQLQ 275
           ++ +  +P    PS+ A G  + F +   +    V  S+ S SP + SAFNP    P LQ
Sbjct: 103 RSCATKAPVNDPPSSLAIGLLMVFTSGMGSATGRVGASSLSASPSISSAFNPAALLPFLQ 162

Query: 274 VLEWL 260
             +WL
Sbjct: 163 ATKWL 167


>06_03_1512 -
           30688098-30688133,30688401-30688537,30688744-30688834,
           30689265-30690815
          Length = 604

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -3

Query: 334 STSSLSPFV*SAFNPQPQLQVLEWLCRSWWKPGSHLTFESSSCAIY 197
           +TSS +  + ++ +PQPQ   L    RS  +PG+ L   ++ C+ Y
Sbjct: 2   ATSSTATIIAASSSPQPQPLFLLLRLRSRARPGARLRAAAARCSSY 47


>11_06_0553 -
           24920428-24921057,24921149-24921276,24921372-24921409,
           24921522-24921734,24921906-24921998,24922089-24922276,
           24922396-24922502,24922614-24922775,24922870-24922953,
           24923060-24923168,24923340-24923468,24923504-24923556,
           24923654-24923759,24924082-24924189
          Length = 715

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/44 (40%), Positives = 27/44 (61%)
 Frame = -3

Query: 541 LLLSLNITLKVSESTV*LTLNVTRIVSSLSCFVKTTSAPSPFTV 410
           L LSL+++L +S S + L L +   ++ L+CF  T   PSP TV
Sbjct: 4   LTLSLSLSLSISFSFLELELCIDGHLAPLNCFPLT---PSPLTV 44


>10_08_0438 +
           17919355-17919391,17919491-17919544,17919928-17920186,
           17920396-17920484,17920645-17920775,17920900-17920946,
           17921029-17921137,17921217-17921303,17921521-17921692,
           17921837-17922309,17922402-17922463,17922537-17922639,
           17923535-17923636
          Length = 574

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
 Frame = +3

Query: 303 LHTKGER-ELVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEVVLTKQLKDETIRVT 479
           LH+  E+ E+V+ + E++       KV    A + GF V+G+   V +TK  KDET+   
Sbjct: 397 LHSDQEKDEIVKPMEEDV-------KVIEKTATMRGFKVEGEDIPV-MTKVPKDETLDSR 448

Query: 480 FNVNHTVDSETLRVMFRLRS 539
               H + ++ L V   L+S
Sbjct: 449 DETCHVIYTQNLVVKSILQS 468


>03_06_0554 + 34691050-34691242,34691327-34691394,34691754-34692275
          Length = 260

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 659 FISRSCRWILKIGAGENQGWCLLGLGQ-PQTEVWNASQRTLASQSEHH 519
           F +  CR+   + A  NQ WC  G G+ P  ++  A +R  A++++ H
Sbjct: 214 FAAEFCRFEENLAADRNQRWCGSGAGESPVYQIRTAPER--AARTKRH 259


>10_08_0078 + 14699588-14700645,14700739-14700874,14701076-14701096
          Length = 404

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -2

Query: 638 WILKIGAGENQGWCLLGLGQPQTEVWNASQRTLASQSEHHPQSLR 504
           W L +    +  W +L L     EV++ S     +  EHHP+  R
Sbjct: 356 WRLAVVHPVSVSWLVLSLSGRAAEVYDLSNSMKFTSHEHHPKEAR 400


>03_01_0369 -
           2863159-2863491,2864149-2864214,2865045-2865140,
           2865530-2865632,2865771-2865838,2866570-2866712,
           2867050-2867242,2867602-2867640,2867742-2867807,
           2868617-2869651
          Length = 713

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 442 KTTSAPSPFTVKPSTSAGRDLTFCALRSATISS 344
           +  + PS   +  + + GR LTF  LRSA +S+
Sbjct: 41  RADACPSAVALADAAAGGRALTFAELRSAVLST 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,798,958
Number of Sequences: 37544
Number of extensions: 368841
Number of successful extensions: 1018
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -