Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0258
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     31   0.87 
SB_48529| Best HMM Match : NADH5_C (HMM E-Value=4.1)                   30   1.5  
SB_18261| Best HMM Match : Cornifin (HMM E-Value=1.6)                  30   1.5  
SB_47411| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_9845| Best HMM Match : NHL (HMM E-Value=3.3)                        30   2.0  
SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)                     29   4.6  
SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019)        28   6.1  
SB_23460| Best HMM Match : 7tm_1 (HMM E-Value=0.44)                    28   8.1  

>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +3

Query: 363 RKAQKVKSLPAEVEGFTVKGDGAEVVLTKQLKD--ETIRVTFNVNHTVDSETLRVMFRLR 536
           R+ QK++SL A++EG             ++L+D  E  RVT    H  + E L+V F  R
Sbjct: 252 REYQKIESLRADLEGAHNSSAQEHAHQLQELRDEMEQQRVTLRKGHLAELEALKVDFERR 311


>SB_48529| Best HMM Match : NADH5_C (HMM E-Value=4.1)
          Length = 246

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = -3

Query: 583 VNLKLRFGTHLRELLLLSLNITLKVSEST-V*LTLNVTRIVS 461
           V LKL   TH+   L+++ N+TLK++ +T V L L VT +V+
Sbjct: 27  VTLKLTVTTHITLELIVTTNVTLKLTVTTLVTLELIVTTLVT 68


>SB_18261| Best HMM Match : Cornifin (HMM E-Value=1.6)
          Length = 500

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = -3

Query: 583 VNLKLRFGTHLRELLLLSLNITLKVSEST-V*LTLNVTRIVS 461
           V LKL   TH+   L+++ N+TLK++ +T V L L VT +V+
Sbjct: 371 VTLKLTVTTHITLELIVTTNVTLKLTVTTLVTLELIVTTLVT 412


>SB_47411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = -3

Query: 511 VSESTV*LTLNVTRIVSSLSCFVKTTSAPS 422
           VSE+   +T+N T  ++S SC  KTTS+PS
Sbjct: 381 VSEARSTVTVNDTGGITSRSCTTKTTSSPS 410


>SB_9845| Best HMM Match : NHL (HMM E-Value=3.3)
          Length = 633

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = -3

Query: 511 VSESTV*LTLNVTRIVSSLSCFVKTTSAPS 422
           VSE+   +T+N T  ++S SC  KTTS+PS
Sbjct: 589 VSEARSTVTVNDTGGITSRSCTTKTTSSPS 618


>SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)
          Length = 2440

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 22/96 (22%), Positives = 40/96 (41%)
 Frame = +3

Query: 201  MAHELLSKVRWDPGFHQLLHNHSNTCSCGCGLKALHTKGERELVEFLTEEIVAERKAQKV 380
            + HEL +  ++  G H  +H  +   +   GL+A    G  E +    +E   E +   V
Sbjct: 1583 VTHELKNVTKFPSGMHNRVHAGNKPTAFTVGLEANDDAGFTEKL----DETPLENERHDV 1638

Query: 381  KSLPAEVEGFTVKGDGAEVVLTKQLKDETIRVTFNV 488
            K+L +  +  T  G+    V  +  + E  R  F +
Sbjct: 1639 KALRSMFDSKTAYGNNKRNVNREHYRGEKKRSMFEI 1674


>SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019)
          Length = 1136

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -2

Query: 227 NLREQLMCHIPLVKSRFTAVCVRLTNPLK 141
           N++EQ++  +P+  +RF +VC  L N LK
Sbjct: 841 NMKEQMLSMVPV--ARFESVCEELNNALK 867


>SB_23460| Best HMM Match : 7tm_1 (HMM E-Value=0.44)
          Length = 267

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = -2

Query: 437 NFSTVSLYSKAFDFSRERLDLLCFAFSNYFFCQELYQF 324
           +FST+ ++S    +S   ++   F F +  +C++L++F
Sbjct: 101 HFSTLLVFSNILMYSNSAINPFIFVFLHSRYCKDLFRF 138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,447,157
Number of Sequences: 59808
Number of extensions: 420504
Number of successful extensions: 1189
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)