Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0258
(684 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z34801-4|CAA84328.1| 236|Caenorhabditis elegans Hypothetical pr... 41 0.001
AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical ... 31 0.58
U41263-11|AAO38595.1| 516|Caenorhabditis elegans Hypothetical p... 30 1.3
U41263-10|AAO38593.1| 610|Caenorhabditis elegans Hypothetical p... 30 1.3
AL590342-5|CAC35862.1| 507|Caenorhabditis elegans Hypothetical ... 30 1.3
AL032627-24|CAA21552.1| 507|Caenorhabditis elegans Hypothetical... 30 1.3
AL032622-8|CAA21503.1| 507|Caenorhabditis elegans Y66A7A.8 prot... 30 1.3
Z48809-3|CAA88746.2| 199|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 29 3.1
Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical pr... 29 4.1
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 29 4.1
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 29 4.1
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 29 4.1
AC025716-16|AAK39609.2| 917|Caenorhabditis elegans Hypothetical... 29 4.1
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr... 28 7.1
U61948-8|AAB03147.2| 782|Caenorhabditis elegans Human hcf1 rela... 27 9.4
AF072907-1|AAD12580.1| 782|Caenorhabditis elegans host cell fac... 27 9.4
>Z34801-4|CAA84328.1| 236|Caenorhabditis elegans Hypothetical
protein F59A2.3 protein.
Length = 236
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = +3
Query: 324 ELVEFLTEEIVAERKAQKVK---SLPAEVEGFTVKGDGAEVVLTKQLKDETIRVTFNVNH 494
EL + L EI AE++ ++ GF V AEV LTK+ E I V FNVNH
Sbjct: 41 ELQQALNREIEAEQQLSSDNLQGAVAPTFAGFQVTNKDAEVRLTKKNGSEDILVVFNVNH 100
Query: 495 TVDSE 509
+VD +
Sbjct: 101 SVDMD 105
>AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical
protein K09F6.3 protein.
Length = 1360
Score = 31.5 bits (68), Expect = 0.58
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +3
Query: 291 GLKALHTKGERELVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEVVLTKQLKDETI 470
G K K REL + I AE+K +++K L A+V+ KG+ + K+++D
Sbjct: 823 GTKIEKEKIARELAAQEAQNIEAEKKKKEIKDLEAKVDYEKQKGEKIKEEAEKEIQDHRK 882
Query: 471 RV 476
+V
Sbjct: 883 KV 884
>U41263-11|AAO38595.1| 516|Caenorhabditis elegans Hypothetical
protein T19D12.2c protein.
Length = 516
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/50 (40%), Positives = 25/50 (50%)
Frame = -3
Query: 460 SLSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSLSPF 311
S +CF +S PSP T P T F +T +S+ STSS SPF
Sbjct: 384 SFTCFDDGSSTPSPTTRCPGTQGTTQPGF-----STTTSLSPSTSSSSPF 428
>U41263-10|AAO38593.1| 610|Caenorhabditis elegans Hypothetical
protein T19D12.2a protein.
Length = 610
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/50 (40%), Positives = 25/50 (50%)
Frame = -3
Query: 460 SLSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSLSPF 311
S +CF +S PSP T P T F +T +S+ STSS SPF
Sbjct: 384 SFTCFDDGSSTPSPTTRCPGTQGTTQPGF-----STTTSLSPSTSSSSPF 428
>AL590342-5|CAC35862.1| 507|Caenorhabditis elegans Hypothetical
protein Y66A7A.8 protein.
Length = 507
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -3
Query: 475 TRIVSSLSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSS 323
T S+ S F T+S P P S D +FC+ SAT S T++
Sbjct: 440 TSFDSAYSSFNVTSSTPEQMCYNPIPSMSTDYSFCSFDSATSSPPLQPTAT 490
>AL032627-24|CAA21552.1| 507|Caenorhabditis elegans Hypothetical
protein Y66A7A.8 protein.
Length = 507
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -3
Query: 475 TRIVSSLSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSS 323
T S+ S F T+S P P S D +FC+ SAT S T++
Sbjct: 440 TSFDSAYSSFNVTSSTPEQMCYNPIPSMSTDYSFCSFDSATSSPPLQPTAT 490
>AL032622-8|CAA21503.1| 507|Caenorhabditis elegans Y66A7A.8
protein.
Length = 507
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -3
Query: 475 TRIVSSLSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSS 323
T S+ S F T+S P P S D +FC+ SAT S T++
Sbjct: 440 TSFDSAYSSFNVTSSTPEQMCYNPIPSMSTDYSFCSFDSATSSPPLQPTAT 490
>Z48809-3|CAA88746.2| 199|Caenorhabditis elegans Hypothetical
protein T01E8.6 protein.
Length = 199
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/74 (25%), Positives = 27/74 (36%)
Frame = -3
Query: 433 SAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSLSPFV*SAFNPQPQLQVLEWLCR 254
S P+P KPS+ + T A P+ A Q ++ R
Sbjct: 29 STPAPEPAKPSSEETTESTEPATSVEDAGEPMKEKRITQPYSSEALTKLKLDQYPLYVER 88
Query: 253 SWWKPGSHLTFESS 212
WWK G +TF +S
Sbjct: 89 EWWKTGKRMTFWAS 102
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.1 bits (62), Expect = 3.1
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = -3
Query: 523 ITLKVSESTV*LTLNVTRIVSSLSCFVKTTS--APSPFTVKPSTSAGR-DLTFCALRSAT 353
+T S ST T T S+ TTS APS T PS+S+ T + S+T
Sbjct: 462 VTSSSSSSTTVTTPTSTESTSTSPSSTVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSST 521
Query: 352 ISSVRNSTSS 323
SS ++STS+
Sbjct: 522 ASSTQSSTST 531
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.1 bits (62), Expect = 3.1
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = -3
Query: 523 ITLKVSESTV*LTLNVTRIVSSLSCFVKTTS--APSPFTVKPSTSAGR-DLTFCALRSAT 353
+T S ST T T S+ TTS APS T PS+S+ T + S+T
Sbjct: 462 VTSSSSSSTTVTTPTSTESTSTSPSSTVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSST 521
Query: 352 ISSVRNSTSS 323
SS ++STS+
Sbjct: 522 ASSTQSSTST 531
>Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical
protein W04G5.9 protein.
Length = 405
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = -3
Query: 520 TLKVSESTV*LTLN--VTRIVSSLSCFVKTTSAPSPF--TVKPSTSAGRDL 380
T K S ST+ T T +++ KTT++P PF TV +TSA R +
Sbjct: 176 TTKTSPSTLRTTTKPPTTTTIATTRITTKTTTSPPPFTTTVTTTTSAARTI 226
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = -3
Query: 439 TTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNST 329
T S+PSP ++ PSTS LT S+T SS ST
Sbjct: 473 TNSSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQST 509
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = -3
Query: 439 TTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNST 329
T S+PSP ++ PSTS LT S+T SS ST
Sbjct: 680 TNSSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQST 716
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = -3
Query: 439 TTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNST 329
T S+PSP ++ PSTS LT S+T SS ST
Sbjct: 680 TNSSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQST 716
>AC025716-16|AAK39609.2| 917|Caenorhabditis elegans Hypothetical
protein Y39G10AR.5 protein.
Length = 917
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 179 FTAVCVRLTNPLKFAVLTHVCSTLWVALTMPLIF 78
F VC LTN +K V H C+ L + L+F
Sbjct: 27 FAGVCFSLTNTVKHCVEQHACTNDGKYLVIALVF 60
>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
protein F26C11.3 protein.
Length = 1317
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/68 (27%), Positives = 38/68 (55%)
Frame = -3
Query: 526 NITLKVSESTV*LTLNVTRIVSSLSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATIS 347
N++ S ST+ L+ T ++++ + +++S S T PST +T +S+T+S
Sbjct: 285 NLSTTTSSSTM---LSSTTLLTTETETRESSSTGSTQTTTPSTEPSTTITTPMEQSSTVS 341
Query: 346 SVRNSTSS 323
SV+ + +S
Sbjct: 342 SVQKTRTS 349
>U61948-8|AAB03147.2| 782|Caenorhabditis elegans Human hcf1 related
protein 1 protein.
Length = 782
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 375 SVLCVQQLFLLSGTLPVLFHLSCEAPSTRSRSCKYWNGC 259
SVL ++F+ G +P+L H S E + + C GC
Sbjct: 274 SVLIGDKMFVYGGWVPLLEHASTEQQTEKEWKCTSSLGC 312
>AF072907-1|AAD12580.1| 782|Caenorhabditis elegans host cell factor
1 protein.
Length = 782
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 375 SVLCVQQLFLLSGTLPVLFHLSCEAPSTRSRSCKYWNGC 259
SVL ++F+ G +P+L H S E + + C GC
Sbjct: 274 SVLIGDKMFVYGGWVPLLEHASTEQQTEKEWKCTSSLGC 312
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,158,041
Number of Sequences: 27780
Number of extensions: 310710
Number of successful extensions: 1024
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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