Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0258
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   2.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.3  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   6.3  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = -1

Query: 309 CEAP--STRSRSCKYWNGCVEA 250
           C +P  +T S S  Y NGCVEA
Sbjct: 164 CNSPENNTCSISNSYTNGCVEA 185


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -2

Query: 395 SRERLDLLCFAFSNYFFCQELYQ 327
           + E +D LC    ++  C E+Y+
Sbjct: 459 TEESVDALCNTLHHWHHCPEIYK 481


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 581 QPQTEVWNASQRTLASQSEHHPQSLR 504
           + QT+ W+ S     ++S+H+   LR
Sbjct: 256 EDQTKGWDGSNMVEGNESDHNDGRLR 281


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 222 KVRWDPGF 245
           K+ WDPGF
Sbjct: 683 KIEWDPGF 690


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,925
Number of Sequences: 438
Number of extensions: 3714
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)