Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0258
(684 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g10010.1 68416.m01201 HhH-GPD base excision DNA repair family... 30 1.6
At4g16670.1 68417.m02518 expressed protein 28 5.0
At3g59910.1 68416.m06686 expressed protein 28 5.0
At4g11960.1 68417.m01904 expressed protein hypothetical protein ... 28 6.6
At5g56050.1 68418.m06993 hypothetical protein 27 8.8
At3g05820.1 68416.m00653 beta-fructofuranosidase, putative / inv... 27 8.8
At2g32980.1 68415.m04042 expressed protein 27 8.8
At2g28660.1 68415.m03484 copper-binding family protein similar t... 27 8.8
At1g78760.1 68414.m09179 F-box family protein contains F-box dom... 27 8.8
>At3g10010.1 68416.m01201 HhH-GPD base excision DNA repair family
protein similar to DEMETER protein [Arabidopsis
thaliana] GI:21743571; contains Pfam profile PF00730:
HhH-GPD superfamily base excision DNA repair protein
Length = 1309
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +3
Query: 435 VVLTKQLKDETIRVTFNVNHTVDSETLRVMFRLRSKSSLRCVPNLSLRLT*SEETPPLVF 614
V++ +Q+ + ++ ++ +T D L + S +S C NL+ E PP V
Sbjct: 683 VLMNEQVDSQMVKGKGHIPYTDDLNDLSQGISMVSSASTHCELNLN-------EVPPEVE 735
Query: 615 TCSYLQDP 638
CS+ QDP
Sbjct: 736 LCSHQQDP 743
>At4g16670.1 68417.m02518 expressed protein
Length = 429
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = -3
Query: 361 SATISSV-RNSTSSLS--PFV*SAFNPQPQL--QVLEWLCRSWWKPGSHLTFESSS 209
S T+SSV N TS S P P+P+ + +E+LCRSW S ++ SS
Sbjct: 30 SMTLSSVPENETSECSSPPATYPPIPPRPKTPREPMEFLCRSWSLSTSEISLALSS 85
>At3g59910.1 68416.m06686 expressed protein
Length = 611
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 264 HSNTCSCGCGLKALHTKGERELVEFLTEEIVAERKAQK 377
+S C CGC K L+ KG+ +LVE E I ++K +
Sbjct: 62 NSGEC-CGCSAKKLNFKGDDDLVE--KENIEQQKKLNR 96
>At4g11960.1 68417.m01904 expressed protein hypothetical protein
F7H19.70 - Arabidopsis thaliana, PID:e1310057
Length = 313
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 457 LSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATISS 344
++C T P+PFT S S R LT L+++T S
Sbjct: 18 ITCSSSRTQCPAPFTHGRSISLRRRLTLLPLKASTDQS 55
>At5g56050.1 68418.m06993 hypothetical protein
Length = 283
Score = 27.5 bits (58), Expect = 8.8
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Frame = -2
Query: 467 CFIFK-LLC*NNFSTVSLY------SKAFDFSRERLDLLCFAFSNYFFCQELYQFSFTFR 309
CFIF LL +T+ LY + FD S +L+ + F YF L Q +FT
Sbjct: 107 CFIFSILLIVFGIATLILYLAVKPRTPVFDISNAKLNTILFESPVYFNGDMLLQLNFTNP 166
Query: 308 VKRL 297
K+L
Sbjct: 167 NKKL 170
>At3g05820.1 68416.m00653 beta-fructofuranosidase, putative /
invertase, putative / saccharase, putative /
beta-fructosidase, putative similar to neutral invertase
[Daucus carota] GI:4200165; contains Pfam profile
PF04853: Plant neutral invertase
Length = 633
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/73 (26%), Positives = 36/73 (49%)
Frame = +3
Query: 258 HNHSNTCSCGCGLKALHTKGERELVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEV 437
H+ S TC+ L ++TK + + E + + K + +++ + EG VK DG E
Sbjct: 86 HSASTTCANDTTLDQIYTKNGLNVKPLVVERLKRDEKDE--EAVNEDEEG--VKRDGFEG 141
Query: 438 VLTKQLKDETIRV 476
V +++E R+
Sbjct: 142 VKCNDVEEEAWRL 154
>At2g32980.1 68415.m04042 expressed protein
Length = 296
Score = 27.5 bits (58), Expect = 8.8
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Frame = +3
Query: 309 TKGER--ELVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEV--VLTKQLKDETI-R 473
+ GER +L+ L E V +RK + L E++G + A + V Q K ET+ R
Sbjct: 50 SNGERGDDLIRVLRELSVVQRK---IADLQVELQGRKDDKNVAHLTHVGEMQKKIETLSR 106
Query: 474 VTFNVNHTVDSETLRVMFRLRSKSSLRCVP 563
+T + + ++ R++ RL+ SL C+P
Sbjct: 107 ITQILKDVIQNKD-RIIARLQQPYSLDCIP 135
>At2g28660.1 68415.m03484 copper-binding family protein similar to
copper homeostasis factor gi:3168840 from Arabidopsis
thaliana; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 265
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -3
Query: 457 LSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSL 320
LSC + +PS F K +++ G D+ SA +S +R S SSL
Sbjct: 67 LSCR-NSFESPSGFRPKIASARGSDVQIRRKSSADVSDLRRSRSSL 111
>At1g78760.1 68414.m09179 F-box family protein contains F-box domain
Pfam:PF00646
Length = 452
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 363 VQQLFLLSGTLPVLFHLSCEAPSTRSRS 280
V++LF+ S TL V+ L CE P R+ S
Sbjct: 297 VKKLFISSHTLEVIHDLGCELPLFRNLS 324
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,255,400
Number of Sequences: 28952
Number of extensions: 292647
Number of successful extensions: 909
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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